Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01860

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
1,992,898	+		CCNA_01859	0.51	-0.0
1,992,931	+		CCNA_01859	0.53	+0.6
1,992,949	+		CCNA_01859	0.54	-0.2
1,992,992	-		CCNA_01859	0.56	-0.2
1,993,043	-		CCNA_01859	0.59	+0.6
1,993,067	-		CCNA_01859	0.60	+0.6
1,993,067	-		CCNA_01859	0.60	-0.0
1,993,157	-		CCNA_01859	0.64	+1.6
1,993,182	+		CCNA_01859	0.65	-0.4
1,993,210	-		CCNA_01859	0.67	+1.6
1,993,236	+		CCNA_01859	0.68	-0.6
1,993,278	+		CCNA_01859	0.70	-0.2
1,993,278	+		CCNA_01859	0.70	+0.2
1,993,359	+		CCNA_01859	0.74	-1.6
1,993,364	+		CCNA_01859	0.74	-0.4
1,993,374	+		CCNA_01859	0.75	-0.2
1,993,404	-		CCNA_01859	0.76	+0.6
1,993,518	+		CCNA_01859	0.82	-2.4
1,993,525	+		CCNA_01859	0.82	+2.6
1,993,526	-		CCNA_01859	0.82	+0.1
1,993,541	-		CCNA_01859	0.83	-0.2
1,993,590	+		CCNA_01859	0.85	-1.8
1,993,665	+		CCNA_01859	0.89	-1.0
1,993,673	-		CCNA_01859	0.90	+1.6
1,993,726	+				+2.5
1,993,825	+				+0.6
1,993,826	+				-0.6
1,993,826	+				-0.9
1,993,829	+				+1.4
1,993,831	+				+1.0
1,993,834	-				-0.8
1,993,834	-				-1.0
1,993,912	+				+0.0
1,993,920	-				-1.0
1,993,932	+				+0.4
1,993,943	+				+0.1
1,993,943	+				+1.3
1,993,943	+				+0.6
1,993,951	-				+0.1
1,993,982	+				-1.0
1,994,001	+				+0.2
1,994,004	+		CCNA_01860	0.10	+1.2
1,994,069	+		CCNA_01860	0.16	-0.4
1,994,072	+		CCNA_01860	0.16	+1.0
1,994,080	-		CCNA_01860	0.17	-0.8
1,994,117	+		CCNA_01860	0.20	-0.0
1,994,169	-		CCNA_01860	0.25	+2.6
1,994,175	+		CCNA_01860	0.25	-2.6
1,994,193	-		CCNA_01860	0.27	-2.2
1,994,229	-		CCNA_01860	0.30	+2.6
1,994,289	+		CCNA_01860	0.35	-3.3
1,994,290	+		CCNA_01860	0.35	-2.1
1,994,356	-		CCNA_01860	0.41	+2.6
1,994,358	+		CCNA_01860	0.41	-0.0
1,994,366	-		CCNA_01860	0.42	-1.4
1,994,418	+		CCNA_01860	0.46	-0.2
1,994,418	+		CCNA_01860	0.46	+1.2
1,994,418	+		CCNA_01860	0.46	-2.2
1,994,418	+		CCNA_01860	0.46	-0.2
1,994,418	+		CCNA_01860	0.46	+0.2
1,994,418	+		CCNA_01860	0.46	-2.4
1,994,426	-		CCNA_01860	0.47	-0.6
1,994,456	+		CCNA_01860	0.50	-0.5
1,994,464	+		CCNA_01860	0.50	-0.5
1,994,472	-		CCNA_01860	0.51	-0.0
1,994,472	-		CCNA_01860	0.51	-0.2
1,994,489	+		CCNA_01860	0.52	-2.1
1,994,497	-		CCNA_01860	0.53	+1.0
1,994,573	+		CCNA_01860	0.60	-0.7
1,994,579	+		CCNA_01860	0.60	-1.5
1,994,587	-		CCNA_01860	0.61	+0.2
1,994,616	+		CCNA_01860	0.64	+0.3
1,994,616	+		CCNA_01860	0.64	-1.2
1,994,616	+		CCNA_01860	0.64	+2.0
1,994,651	-		CCNA_01860	0.67	-0.6
1,994,651	-		CCNA_01860	0.67	-1.0
1,994,670	+		CCNA_01860	0.68	-0.8
1,994,678	-		CCNA_01860	0.69	+1.6
1,994,714	-		CCNA_01860	0.72	+0.6
1,994,806	-		CCNA_01860	0.80	-1.0
1,994,866	+		CCNA_01860	0.85	-0.8
1,994,866	+		CCNA_01860	0.85	-0.7
1,994,866	+		CCNA_01860	0.85	-0.0
1,994,866	+		CCNA_01860	0.85	+0.8
1,994,866	+		CCNA_01860	0.85	-1.3
1,994,866	+		CCNA_01860	0.85	-1.1
1,994,866	+		CCNA_01860	0.85	-0.2
1,994,874	-		CCNA_01860	0.86	+1.0
1,994,874	-		CCNA_01860	0.86	-0.2
1,994,874	-		CCNA_01860	0.86	+0.2
1,994,885	-		CCNA_01860	0.87	+1.0
1,994,922	+				-1.4
1,994,936	-				+0.2
1,994,959	+				-0.8
1,994,966	+				-0.6
1,994,974	-				-0.5
1,994,999	+				-0.8
1,995,002	+				-1.5
1,995,008	+				-0.6
1,995,033	+				-0.9
1,995,041	-				+0.8
1,995,041	-				-0.5
1,995,041	-				-0.4
1,995,051	+				-0.4
1,995,078	-				-0.4
1,995,100	+				+0.6
1,995,113	+				-2.6
1,995,113	+				-0.0
1,995,118	+				+0.6
1,995,156	-				+0.6
1,995,169	-				+1.0
1,995,220	+				+2.6
1,995,228	-				-1.5
1,995,230	+				-1.7
1,995,230	+				-0.7
1,995,230	+				-1.3
1,995,230	+				-1.3
1,995,238	-				-0.8
1,995,238	-				-0.2
1,995,238	-				+0.4
1,995,238	-				+0.2
1,995,238	-				-1.0
1,995,243	+				-0.4
1,995,305	+				-0.3
1,995,336	+				-0.0
1,995,346	+				+0.6
1,995,346	+				-0.0
1,995,346	+				+0.1
1,995,354	-				+2.6
1,995,396	+				-1.1
1,995,408	+				-2.1
1,995,408	+				+0.6
1,995,421	+		CCNA_01861	0.11	+0.2
1,995,436	-		CCNA_01861	0.12	+1.0
1,995,438	+		CCNA_01861	0.12	+0.6
1,995,535	+		CCNA_01861	0.20	-0.0
1,995,569	+		CCNA_01861	0.23	-1.4
1,995,577	-				+2.6
1,995,577	-		CCNA_01861	0.24	+0.6
1,995,588	+		CCNA_01861	0.25	-1.6
1,995,588	+		CCNA_01861	0.25	+1.2
1,995,630	+		CCNA_01861	0.28	-0.7
1,995,711	-		CCNA_01861	0.35	-0.9
1,995,713	+		CCNA_01861	0.35	+0.3
1,995,723	+		CCNA_01861	0.36	+0.1
1,995,723	+		CCNA_01861	0.36	-0.8
1,995,723	+		CCNA_01861	0.36	+0.4
1,995,728	+		CCNA_01861	0.37	-1.4
1,995,728	+		CCNA_01861	0.37	-0.2
1,995,728	+		CCNA_01861	0.37	-0.2
1,995,731	-		CCNA_01861	0.37	+0.6
1,995,731	-		CCNA_01861	0.37	-0.9
1,995,731	-		CCNA_01861	0.37	+0.2
1,995,733	+		CCNA_01861	0.37	+1.6
1,995,866	+		CCNA_01861	0.48	+0.1
1,995,879	+		CCNA_01861	0.49	+0.2
1,995,971	+		CCNA_01861	0.57	-2.4
1,995,971	+		CCNA_01861	0.57	-0.0
1,995,979	-		CCNA_01861	0.58	+0.6
1,996,001	+		CCNA_01861	0.59	+2.9
1,996,001	+		CCNA_01861	0.59	+3.0
1,996,001	+		CCNA_01861	0.59	+3.4
1,996,002	-		CCNA_01861	0.60	+1.6