Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01828

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
1,953,776	+		CCNA_01827	0.32	+1.5
1,953,805	+		CCNA_01827	0.34	+1.5
1,953,887	-		CCNA_01827	0.39	-1.0
1,953,914	+		CCNA_01827	0.41	+2.6
1,953,982	+		CCNA_01827	0.46	+1.8
1,954,038	-		CCNA_01827	0.50	+1.4
1,954,058	+		CCNA_01827	0.51	+1.6
1,954,079	+		CCNA_01827	0.52	+2.2
1,954,134	+		CCNA_01827	0.56	+2.1
1,954,142	-		CCNA_01827	0.57	-0.6
1,954,284	-		CCNA_01827	0.67	-1.1
1,954,384	+		CCNA_01827	0.73	+2.0
1,954,385	+		CCNA_01827	0.73	+2.4
1,954,385	+		CCNA_01827	0.73	+1.2
1,954,385	+		CCNA_01827	0.73	+0.6
1,954,393	-		CCNA_01827	0.74	-0.2
1,954,393	-		CCNA_01827	0.74	+1.6
1,954,393	-		CCNA_01827	0.74	+0.3
1,954,393	-		CCNA_01827	0.74	+1.0
1,954,393	-		CCNA_01827	0.74	-1.3
1,954,393	-		CCNA_01827	0.74	+0.6
1,954,393	-		CCNA_01827	0.74	+0.6
1,954,453	+		CCNA_01827	0.78	+1.5
1,954,497	-		CCNA_01827	0.81	+0.3
1,954,530	-		CCNA_01827	0.83	-0.2
1,954,615	-		CCNA_01827	0.89	-1.1
1,954,659	-				+0.3
1,954,669	-				+0.3
1,954,684	+				+1.7
1,954,684	+				-0.5
1,954,684	+				+2.9
1,954,691	+				+1.1
1,954,692	-				+0.3
1,954,692	-				+0.6
1,954,706	+				+1.2
1,954,752	+				+2.7
1,954,823	+				+1.4
1,954,835	+		CCNA_01828	0.12	-2.0
1,954,879	+		CCNA_01828	0.19	+0.9
1,954,989	-		CCNA_01828	0.39	-0.1
1,954,991	+		CCNA_01828	0.39	-1.0
1,955,063	-		CCNA_01828	0.51	+1.0
1,955,111	+		CCNA_01828	0.60	-1.6
1,955,111	+		CCNA_01828	0.60	-1.8
1,955,111	+		CCNA_01828	0.60	+0.3
1,955,111	+		CCNA_01828	0.60	-0.9
1,955,111	+		CCNA_01828	0.60	-0.7
1,955,111	+		CCNA_01828	0.60	+1.4
1,955,146	+		CCNA_01828	0.66	-1.0
1,955,146	+		CCNA_01828	0.66	-0.3
1,955,149	-		CCNA_01828	0.66	-1.4
1,955,206	-		CCNA_01828	0.76	+0.5
1,955,244	+		CCNA_01828	0.83	-1.2
1,955,252	-		CCNA_01828	0.84	+0.1
1,955,252	-		CCNA_01828	0.84	-0.4
1,955,252	-		CCNA_01828	0.84	-1.3
1,955,252	-		CCNA_01828	0.84	+0.3
1,955,253	-		CCNA_01828	0.84	-0.4
1,955,292	-				+1.3
1,955,294	+				-1.7
1,955,324	-				-0.2
1,955,329	-				-0.6
1,955,329	-				-0.5
1,955,345	-				+1.6
1,955,355	+				-1.0
1,955,355	+				+0.3
1,955,365	+				-0.4
1,955,404	+				-0.6
1,955,404	+				-0.1
1,955,407	-				-0.2
1,955,434	-				-1.0
1,955,473	+				+1.3
1,955,481	+				+0.3
1,955,500	+				-0.3
1,955,557	-				-0.7
1,955,567	+				+0.6
1,955,578	+				-1.1
1,955,585	-				+0.8
1,955,622	+		CCNA_01829	0.12	+0.4
1,955,630	-		CCNA_01829	0.13	-0.2
1,955,636	+		CCNA_01829	0.14	+0.3
1,955,691	+		CCNA_01829	0.19	-0.3
1,955,699	-		CCNA_01829	0.20	+0.3
1,955,763	+		CCNA_01829	0.26	-2.1
1,955,791	-		CCNA_01829	0.28	+0.1
1,955,806	-		CCNA_01829	0.30	+0.3
1,955,867	-		CCNA_01829	0.36	-0.6
1,955,874	+		CCNA_01829	0.36	+3.6
1,955,874	+		CCNA_01829	0.36	+1.4
1,955,882	-		CCNA_01829	0.37	+0.3
1,955,882	-		CCNA_01829	0.37	+1.0
1,955,882	-		CCNA_01829	0.37	+2.7
1,955,883	-		CCNA_01829	0.37	-2.0
1,955,915	+		CCNA_01829	0.40	+0.0
1,955,944	-		CCNA_01829	0.43	+0.5
1,956,092	+		CCNA_01829	0.57	-1.0
1,956,092	+		CCNA_01829	0.57	+0.8
1,956,092	+		CCNA_01829	0.57	+0.5
1,956,092	+		CCNA_01829	0.57	-0.4
1,956,100	-		CCNA_01829	0.58	-0.4
1,956,144	+		CCNA_01829	0.62	+1.0
1,956,145	+		CCNA_01829	0.62	+2.0
1,956,145	+		CCNA_01829	0.62	-0.3
1,956,163	+		CCNA_01829	0.64	-2.4
1,956,163	+		CCNA_01829	0.64	+0.3
1,956,163	+		CCNA_01829	0.64	+1.0
1,956,163	-		CCNA_01829	0.64	+0.3
1,956,171	-		CCNA_01829	0.65	+1.6
1,956,219	+		CCNA_01829	0.69	-0.5
1,956,219	+		CCNA_01829	0.69	+2.6
1,956,227	-		CCNA_01829	0.70	-1.2
1,956,246	+		CCNA_01829	0.72	-1.1
1,956,276	-		CCNA_01829	0.75	-0.4
1,956,308	+		CCNA_01829	0.78	+0.3
1,956,339	+		CCNA_01829	0.81	-0.5
1,956,340	-		CCNA_01829	0.81	-1.0