Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01802

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01800 and CCNA_01801 are separated by 5 nucleotidesCCNA_01801 and CCNA_01802 overlap by 4 nucleotidesCCNA_01802 and CCNA_01803 are separated by 12 nucleotides CCNA_01800: CCNA_01800 - pyruvate dehydrogenase E1 component beta subunit, at 1,924,985 to 1,926,337 _01800 CCNA_01801: CCNA_01801 - hypothetical protein, at 1,926,343 to 1,926,795 _01801 CCNA_01802: CCNA_01802 - hypothetical protein, at 1,926,792 to 1,926,908 _01802 CCNA_01803: CCNA_01803 - pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component, at 1,926,921 to 1,928,207 _01803 Position (kb) 1926 1927Strain fitness (log2 ratio) -1 0 1 2 3at 1926.435 kb on + strand, within CCNA_01801at 1926.613 kb on - strand, within CCNA_01801at 1926.626 kb on + strand, within CCNA_01801at 1926.631 kb on + strand, within CCNA_01801at 1926.631 kb on + strandat 1926.631 kb on + strand, within CCNA_01801at 1926.631 kb on + strand, within CCNA_01801at 1926.656 kb on + strand, within CCNA_01801at 1926.689 kb on - strand, within CCNA_01801at 1926.694 kb on + strand, within CCNA_01801at 1926.699 kb on + strand, within CCNA_01801at 1926.704 kb on + strand, within CCNA_01801at 1926.733 kb on - strand, within CCNA_01801at 1926.738 kb on + strand, within CCNA_01801at 1926.739 kb on + strand, within CCNA_01801at 1926.771 kb on + strandat 1926.771 kb on + strandat 1926.779 kb on - strandat 1926.801 kb on + strandat 1926.819 kb on - strand, within CCNA_01802at 1926.819 kb on - strand, within CCNA_01802at 1926.819 kb on - strand, within CCNA_01802at 1926.838 kb on + strand, within CCNA_01802at 1926.838 kb on + strand, within CCNA_01802at 1926.884 kb on + strand, within CCNA_01802

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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1,926,435 + CCNA_01801 0.20 +1.6
1,926,613 - CCNA_01801 0.60 +0.1
1,926,626 + CCNA_01801 0.62 +2.6
1,926,631 + CCNA_01801 0.64 +2.7
1,926,631 + +2.6
1,926,631 + CCNA_01801 0.64 +1.9
1,926,631 + CCNA_01801 0.64 +2.3
1,926,656 + CCNA_01801 0.69 +1.6
1,926,689 - CCNA_01801 0.76 +1.1
1,926,694 + CCNA_01801 0.77 +2.9
1,926,699 + CCNA_01801 0.79 +1.6
1,926,704 + CCNA_01801 0.80 +2.3
1,926,733 - CCNA_01801 0.86 +0.5
1,926,738 + CCNA_01801 0.87 +1.6
1,926,739 + CCNA_01801 0.87 +2.0
1,926,771 + +1.5
1,926,771 + +1.9
1,926,779 - +2.6
1,926,801 + +2.2
1,926,819 - CCNA_01802 0.23 +2.6
1,926,819 - CCNA_01802 0.23 -0.7
1,926,819 - CCNA_01802 0.23 -0.5
1,926,838 + CCNA_01802 0.39 +2.6
1,926,838 + CCNA_01802 0.39 +2.3
1,926,884 + CCNA_01802 0.79 +2.2

Or see this region's nucleotide sequence