Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01233

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
1,359,253	-		CCNA_01231	0.51	-1.3
1,359,253	-		CCNA_01231	0.51	-0.1
1,359,270	+		CCNA_01231	0.52	-0.3
1,359,278	-		CCNA_01231	0.53	+0.2
1,359,278	-		CCNA_01231	0.53	+0.1
1,359,298	+		CCNA_01231	0.55	+0.5
1,359,306	-		CCNA_01231	0.56	-0.3
1,359,323	-		CCNA_01231	0.58	+2.4
1,359,331	+		CCNA_01231	0.58	-0.3
1,359,331	+		CCNA_01231	0.58	+2.2
1,359,331	+		CCNA_01231	0.58	-0.8
1,359,339	-		CCNA_01231	0.59	-0.6
1,359,339	-		CCNA_01231	0.59	+1.5
1,359,340	-		CCNA_01231	0.59	+0.5
1,359,345	-		CCNA_01231	0.60	-1.1
1,359,353	+		CCNA_01231	0.60	+0.4
1,359,361	-		CCNA_01231	0.61	+0.9
1,359,363	+		CCNA_01231	0.61	-0.6
1,359,371	-		CCNA_01231	0.62	-0.1
1,359,376	+		CCNA_01231	0.63	+2.5
1,359,384	-		CCNA_01231	0.64	-0.1
1,359,404	+		CCNA_01231	0.65	-1.2
1,359,404	+		CCNA_01231	0.65	-1.3
1,359,412	-		CCNA_01231	0.66	+1.2
1,359,412	-		CCNA_01231	0.66	+0.1
1,359,433	+		CCNA_01231	0.68	-0.6
1,359,448	+		CCNA_01231	0.70	-0.8
1,359,471	+		CCNA_01231	0.72	+0.2
1,359,471	+		CCNA_01231	0.72	-0.8
1,359,471	+		CCNA_01231	0.72	+0.2
1,359,471	+		CCNA_01231	0.72	-1.1
1,359,471	+		CCNA_01231	0.72	-1.3
1,359,471	+		CCNA_01231	0.72	-0.6
1,359,471	+		CCNA_01231	0.72	+2.5
1,359,477	-		CCNA_01231	0.73	-1.9
1,359,479	-		CCNA_01231	0.73	-0.5
1,359,479	-		CCNA_01231	0.73	+0.8
1,359,479	-		CCNA_01231	0.73	+1.9
1,359,479	-		CCNA_01231	0.73	-1.2
1,359,479	-		CCNA_01231	0.73	-0.1
1,359,500	+		CCNA_01231	0.75	+2.5
1,359,506	-		CCNA_01231	0.76	-1.2
1,359,508	-		CCNA_01231	0.76	-0.7
1,359,508	-		CCNA_01231	0.76	-1.4
1,359,508	-		CCNA_01231	0.76	+0.4
1,359,534	+		CCNA_01231	0.78	+1.9
1,359,539	+		CCNA_01231	0.79	-0.9
1,359,580	-		CCNA_01231	0.83	-0.9
1,359,589	+		CCNA_01231	0.84	-0.9
1,359,601	+		CCNA_01231	0.85	+0.5
1,359,609	-		CCNA_01231	0.86	-0.1
1,359,617	-		CCNA_01231	0.86	+2.5
1,359,629	-		CCNA_01231	0.88	+0.5
1,359,633	+		CCNA_01231	0.88	+0.5
1,359,748	+				+0.7
1,359,769	+				-1.2
1,359,777	-				-0.8
1,359,779	+				+0.6
1,359,787	-				-0.5
1,359,841	-		CCNA_01232	0.17	-0.5
1,359,852	-		CCNA_01232	0.19	-1.1
1,359,858	-		CCNA_01232	0.21	-1.4
1,359,874	+		CCNA_01232	0.24	-0.5
1,359,924	-		CCNA_01232	0.34	-0.1
1,359,967	+		CCNA_01232	0.43	+1.9
1,359,967	+		CCNA_01232	0.43	+2.5
1,359,967	+		CCNA_01232	0.43	+0.2
1,359,975	+		CCNA_01232	0.45	-0.3
1,359,983	-		CCNA_01232	0.47	+0.5
1,359,985	-		CCNA_01232	0.47	-0.9
1,359,985	-		CCNA_01232	0.47	-0.4
1,359,998	+		CCNA_01232	0.50	-0.5
1,360,020	-		CCNA_01232	0.54	+1.3
1,360,082	-		CCNA_01232	0.67	-1.2
1,360,103	+		CCNA_01232	0.72	-1.3
1,360,111	-		CCNA_01232	0.73	-0.7
1,360,111	-		CCNA_01232	0.73	+1.5
1,360,200	-				+0.7
1,360,220	-				-0.9
1,360,220	-				-1.0
1,360,231	+				+2.3
1,360,388	-		CCNA_01233	0.15	+0.9
1,360,432	-		CCNA_01233	0.20	-0.8
1,360,436	+		CCNA_01233	0.20	+1.5
1,360,436	+		CCNA_01233	0.20	+0.9
1,360,467	+		CCNA_01233	0.24	+0.5
1,360,476	+		CCNA_01233	0.25	-0.1
1,360,476	+		CCNA_01233	0.25	-0.8
1,360,484	-		CCNA_01233	0.25	-1.6
1,360,484	-		CCNA_01233	0.25	+0.9
1,360,501	+		CCNA_01233	0.27	+3.1
1,360,509	-		CCNA_01233	0.28	-0.7
1,360,520	-				+2.5
1,360,524	-		CCNA_01233	0.30	-1.6
1,360,545	+		CCNA_01233	0.32	+0.3
1,360,635	-		CCNA_01233	0.42	-0.3
1,360,653	-		CCNA_01233	0.44	+1.7
1,360,666	+		CCNA_01233	0.45	+1.5
1,360,674	-		CCNA_01233	0.46	+0.2
1,360,684	-		CCNA_01233	0.47	-1.4
1,360,745	-		CCNA_01233	0.54	-1.2
1,360,768	+		CCNA_01233	0.57	-1.2
1,360,788	+		CCNA_01233	0.59	-0.9
1,360,797	+		CCNA_01233	0.60	-0.7
1,360,816	+		CCNA_01233	0.62	-0.1
1,360,822	-		CCNA_01233	0.63	+2.2
1,360,837	+		CCNA_01233	0.64	-1.1
1,360,839	-		CCNA_01233	0.64	+1.5
1,360,847	+		CCNA_01233	0.65	-0.3
1,360,847	+		CCNA_01233	0.65	-0.7
1,360,847	+		CCNA_01233	0.65	+2.5
1,360,855	-		CCNA_01233	0.66	-0.5
1,360,871	+		CCNA_01233	0.68	-0.8
1,360,872	-		CCNA_01233	0.68	-0.4
1,360,914	+		CCNA_01233	0.73	-0.7
1,360,929	-		CCNA_01233	0.74	+2.5
1,360,938	+		CCNA_01233	0.75	+0.5
1,360,986	+		CCNA_01233	0.81	-0.5
1,360,986	+		CCNA_01233	0.81	-1.5
1,360,988	-		CCNA_01233	0.81	-0.7
1,361,057	+		CCNA_01233	0.88	-0.1
1,361,062	+		CCNA_01233	0.89	-0.9
1,361,062	+		CCNA_01233	0.89	-1.2
1,361,065	-		CCNA_01233	0.89	+0.5
1,361,072	-				+1.2
1,361,086	+				-0.1
1,361,089	-				+0.2
1,361,091	+				+2.5
1,361,091	+				+1.5
1,361,091	+				-0.9
1,361,091	+				-0.3
1,361,091	+				-1.2
1,361,094	-				-0.9
1,361,096	-				-1.3
1,361,099	-				+1.5
1,361,099	-				+0.5
1,361,099	-				-0.8
1,361,124	+				-1.2
1,361,132	-				+0.9
1,361,132	-				-0.3
1,361,171	-				-0.1
1,361,237	+				-1.2
1,361,256	+				-0.1
1,361,264	-				+0.2
1,361,265	+				+0.1
1,361,266	+				+1.5
1,361,267	+				+0.5
1,361,317	-				+0.5
1,361,348	+				-1.4
1,361,356	+				+0.0
1,361,356	+				-2.2
1,361,367	+		CCNA_01234	0.11	+0.1
1,361,375	-		CCNA_01234	0.12	+2.5
1,361,375	-		CCNA_01234	0.12	-0.2
1,361,418	-		CCNA_01234	0.16	+1.1
1,361,419	-		CCNA_01234	0.16	-1.3
1,361,431	+		CCNA_01234	0.17	-1.3
1,361,436	+		CCNA_01234	0.17	-0.7
1,361,437	+		CCNA_01234	0.17	+0.9
1,361,444	-		CCNA_01234	0.18	-1.1
1,361,444	-		CCNA_01234	0.18	+1.5
1,361,456	+		CCNA_01234	0.19	-0.1
1,361,456	+		CCNA_01234	0.19	-0.7
1,361,464	-		CCNA_01234	0.20	-1.3
1,361,493	-		CCNA_01234	0.22	-1.2
1,361,499	-		CCNA_01234	0.23	+0.1
1,361,501	-		CCNA_01234	0.23	+1.9
1,361,513	+		CCNA_01234	0.24	-1.1
1,361,539	-		CCNA_01234	0.27	+0.5
1,361,574	+		CCNA_01234	0.30	-1.7
1,361,580	-		CCNA_01234	0.30	-0.3
1,361,586	+		CCNA_01234	0.31	-0.2
1,361,586	+		CCNA_01234	0.31	-0.6
1,361,594	-		CCNA_01234	0.32	-2.1
1,361,594	-		CCNA_01234	0.32	+2.5
1,361,594	-		CCNA_01234	0.32	-0.8
1,361,603	+		CCNA_01234	0.33	-1.9
1,361,609	+		CCNA_01234	0.33	-1.5
1,361,626	+		CCNA_01234	0.35	+0.3
1,361,639	-		CCNA_01234	0.36	-0.2
1,361,667	+		CCNA_01234	0.38	-0.5
1,361,667	+		CCNA_01234	0.38	-0.4
1,361,675	-		CCNA_01234	0.39	+1.8
1,361,675	-		CCNA_01234	0.39	+1.9
1,361,675	-		CCNA_01234	0.39	+2.1
1,361,675	-		CCNA_01234	0.39	+1.6
1,361,684	+		CCNA_01234	0.40	+0.9
1,361,684	+		CCNA_01234	0.40	+0.3
1,361,684	+		CCNA_01234	0.40	-0.1
1,361,684	+		CCNA_01234	0.40	-0.1
1,361,684	+		CCNA_01234	0.40	-1.4
1,361,684	+		CCNA_01234	0.40	-1.6
1,361,692	-		CCNA_01234	0.41	+0.5
1,361,703	+		CCNA_01234	0.42	-0.1
1,361,705	-		CCNA_01234	0.42	-1.6
1,361,706	-		CCNA_01234	0.42	-1.7
1,361,715	+		CCNA_01234	0.43	+1.5
1,361,715	+		CCNA_01234	0.43	-0.7
1,361,715	+		CCNA_01234	0.43	+0.1
1,361,715	+		CCNA_01234	0.43	-1.3
1,361,717	+		CCNA_01234	0.43	-0.8
1,361,723	-		CCNA_01234	0.43	+0.5
1,361,723	-		CCNA_01234	0.43	+0.2
1,361,723	-		CCNA_01234	0.43	+0.2
1,361,723	-		CCNA_01234	0.43	-1.2
1,361,859	+		CCNA_01234	0.56	-1.4
1,361,859	+		CCNA_01234	0.56	+0.9
1,361,860	-		CCNA_01234	0.56	-0.8
1,361,867	-		CCNA_01234	0.57	+0.9
1,361,935	+		CCNA_01234	0.63	-1.4
1,361,982	+		CCNA_01234	0.67	+0.5
1,361,982	+		CCNA_01234	0.67	+0.2
1,361,995	+		CCNA_01234	0.68	-1.5
1,362,003	-		CCNA_01234	0.69	+0.1
1,362,019	+		CCNA_01234	0.71	+0.5
1,362,037	+		CCNA_01234	0.72	-1.1
1,362,105	+		CCNA_01234	0.78	+0.2
1,362,146	-		CCNA_01234	0.82	-0.5