Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01135

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01133 and CCNA_01134 are separated by 121 nucleotidesCCNA_01134 and CCNA_01135 are separated by 38 nucleotidesCCNA_01135 and CCNA_01136 are separated by 110 nucleotides CCNA_01133: CCNA_01133 - hypothetical protein, at 1,237,868 to 1,238,398 _01133 CCNA_01134: CCNA_01134 - LuxR-family transcriptional regulator, at 1,238,520 to 1,238,933 _01134 CCNA_01135: CCNA_01135 - hypothetical protein, at 1,238,972 to 1,239,289 _01135 CCNA_01136: CCNA_01136 - hypothetical protein, at 1,239,400 to 1,240,290 _01136 Position (kb) 1238 1239 1240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1238.020 kb on - strand, within CCNA_01133at 1238.037 kb on + strand, within CCNA_01133at 1238.047 kb on + strand, within CCNA_01133at 1238.055 kb on + strand, within CCNA_01133at 1238.118 kb on + strand, within CCNA_01133at 1238.121 kb on - strand, within CCNA_01133at 1238.126 kb on - strand, within CCNA_01133at 1238.127 kb on + strand, within CCNA_01133at 1238.135 kb on - strand, within CCNA_01133at 1238.137 kb on + strand, within CCNA_01133at 1238.137 kb on + strand, within CCNA_01133at 1238.140 kb on - strand, within CCNA_01133at 1238.140 kb on - strand, within CCNA_01133at 1238.145 kb on - strand, within CCNA_01133at 1238.185 kb on + strand, within CCNA_01133at 1238.218 kb on - strand, within CCNA_01133at 1238.218 kb on - strand, within CCNA_01133at 1238.223 kb on - strand, within CCNA_01133at 1238.285 kb on + strand, within CCNA_01133at 1238.293 kb on - strand, within CCNA_01133at 1238.302 kb on + strand, within CCNA_01133at 1238.355 kb on - strandat 1238.361 kb on - strandat 1238.378 kb on + strandat 1238.386 kb on - strandat 1238.386 kb on - strandat 1238.395 kb on + strandat 1238.396 kb on - strandat 1238.400 kb on + strandat 1238.451 kb on - strandat 1238.470 kb on + strandat 1238.517 kb on + strandat 1238.538 kb on + strandat 1238.555 kb on + strandat 1238.576 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.595 kb on - strand, within CCNA_01134at 1238.600 kb on - strand, within CCNA_01134at 1238.607 kb on + strand, within CCNA_01134at 1238.617 kb on + strand, within CCNA_01134at 1238.638 kb on - strand, within CCNA_01134at 1238.687 kb on - strand, within CCNA_01134at 1238.716 kb on - strand, within CCNA_01134at 1238.754 kb on - strand, within CCNA_01134at 1238.809 kb on + strandat 1238.819 kb on + strand, within CCNA_01134at 1238.834 kb on + strand, within CCNA_01134at 1238.838 kb on + strand, within CCNA_01134at 1238.859 kb on + strand, within CCNA_01134at 1238.877 kb on - strand, within CCNA_01134at 1238.887 kb on - strand, within CCNA_01134at 1238.901 kb on + strandat 1238.913 kb on + strandat 1238.913 kb on + strandat 1238.935 kb on + strandat 1238.936 kb on + strandat 1238.953 kb on - strandat 1238.970 kb on + strandat 1238.970 kb on + strandat 1238.970 kb on + strandat 1239.000 kb on + strandat 1239.058 kb on + strand, within CCNA_01135at 1239.058 kb on + strand, within CCNA_01135at 1239.058 kb on + strand, within CCNA_01135at 1239.060 kb on + strand, within CCNA_01135at 1239.060 kb on + strand, within CCNA_01135at 1239.068 kb on - strand, within CCNA_01135at 1239.068 kb on - strand, within CCNA_01135at 1239.167 kb on - strand, within CCNA_01135at 1239.167 kb on - strand, within CCNA_01135at 1239.182 kb on - strand, within CCNA_01135at 1239.256 kb on - strand, within CCNA_01135at 1239.269 kb on + strandat 1239.277 kb on - strandat 1239.316 kb on + strandat 1239.322 kb on + strandat 1239.322 kb on + strandat 1239.371 kb on - strandat 1239.384 kb on + strandat 1239.384 kb on + strandat 1239.384 kb on + strandat 1239.392 kb on - strandat 1239.392 kb on - strandat 1239.392 kb on - strandat 1239.392 kb on - strandat 1239.392 kb on - strandat 1239.392 kb on - strandat 1239.414 kb on + strandat 1239.433 kb on - strandat 1239.436 kb on + strandat 1239.441 kb on + strandat 1239.462 kb on + strandat 1239.470 kb on + strandat 1239.499 kb on + strand, within CCNA_01136at 1239.514 kb on - strand, within CCNA_01136at 1239.519 kb on - strand, within CCNA_01136at 1239.584 kb on + strand, within CCNA_01136at 1239.584 kb on + strand, within CCNA_01136at 1239.591 kb on + strand, within CCNA_01136at 1239.592 kb on - strand, within CCNA_01136at 1239.592 kb on - strand, within CCNA_01136at 1239.592 kb on - strand, within CCNA_01136at 1239.600 kb on - strand, within CCNA_01136at 1239.600 kb on - strand, within CCNA_01136at 1239.601 kb on + strand, within CCNA_01136at 1239.637 kb on - strand, within CCNA_01136at 1239.639 kb on - strand, within CCNA_01136at 1239.703 kb on - strand, within CCNA_01136at 1239.713 kb on - strand, within CCNA_01136at 1239.745 kb on - strand, within CCNA_01136at 1239.782 kb on - strand, within CCNA_01136at 1239.819 kb on + strand, within CCNA_01136at 1239.830 kb on + strand, within CCNA_01136at 1239.837 kb on - strand, within CCNA_01136at 1239.839 kb on + strand, within CCNA_01136at 1239.855 kb on + strand, within CCNA_01136at 1239.859 kb on + strand, within CCNA_01136at 1239.860 kb on + strand, within CCNA_01136at 1239.860 kb on + strand, within CCNA_01136at 1239.860 kb on + strand, within CCNA_01136at 1239.868 kb on - strand, within CCNA_01136at 1239.874 kb on + strand, within CCNA_01136at 1239.910 kb on + strand, within CCNA_01136at 1239.920 kb on + strand, within CCNA_01136at 1239.920 kb on + strand, within CCNA_01136at 1239.939 kb on + strand, within CCNA_01136at 1239.947 kb on - strand, within CCNA_01136at 1239.966 kb on + strand, within CCNA_01136at 1239.966 kb on + strand, within CCNA_01136at 1239.976 kb on + strand, within CCNA_01136at 1239.976 kb on + strand, within CCNA_01136at 1239.976 kb on + strand, within CCNA_01136at 1239.976 kb on + strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.984 kb on - strand, within CCNA_01136at 1239.989 kb on - strand, within CCNA_01136at 1240.000 kb on - strand, within CCNA_01136at 1240.028 kb on + strand, within CCNA_01136at 1240.036 kb on - strand, within CCNA_01136at 1240.066 kb on - strand, within CCNA_01136at 1240.068 kb on - strand, within CCNA_01136at 1240.109 kb on - strand, within CCNA_01136at 1240.129 kb on + strand, within CCNA_01136at 1240.132 kb on - strand, within CCNA_01136at 1240.145 kb on + strand, within CCNA_01136at 1240.195 kb on + strand, within CCNA_01136at 1240.195 kb on + strand, within CCNA_01136at 1240.195 kb on + strand, within CCNA_01136at 1240.195 kb on + strand, within CCNA_01136at 1240.210 kb on + strandat 1240.234 kb on - strandat 1240.254 kb on + strandat 1240.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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1,238,020 - CCNA_01133 0.29 -1.4
1,238,037 + CCNA_01133 0.32 -0.4
1,238,047 + CCNA_01133 0.34 +1.4
1,238,055 + CCNA_01133 0.35 -0.7
1,238,118 + CCNA_01133 0.47 -1.3
1,238,121 - CCNA_01133 0.48 -1.0
1,238,126 - CCNA_01133 0.49 -1.9
1,238,127 + CCNA_01133 0.49 +0.4
1,238,135 - CCNA_01133 0.50 -0.6
1,238,137 + CCNA_01133 0.51 +0.1
1,238,137 + CCNA_01133 0.51 -0.8
1,238,140 - CCNA_01133 0.51 -0.2
1,238,140 - CCNA_01133 0.51 -2.2
1,238,145 - CCNA_01133 0.52 -1.0
1,238,185 + CCNA_01133 0.60 -0.7
1,238,218 - CCNA_01133 0.66 -0.4
1,238,218 - CCNA_01133 0.66 -0.1
1,238,223 - CCNA_01133 0.67 -0.2
1,238,285 + CCNA_01133 0.79 -0.5
1,238,293 - CCNA_01133 0.80 -2.5
1,238,302 + CCNA_01133 0.82 -0.8
1,238,355 - -0.1
1,238,361 - +1.4
1,238,378 + -0.9
1,238,386 - +0.4
1,238,386 - +0.3
1,238,395 + -2.4
1,238,396 - +1.8
1,238,400 + +1.2
1,238,451 - -0.2
1,238,470 + -2.5
1,238,517 + -0.7
1,238,538 + +1.8
1,238,555 + -0.1
1,238,576 + CCNA_01134 0.14 -1.4
1,238,587 + CCNA_01134 0.16 +0.0
1,238,587 + CCNA_01134 0.16 +0.8
1,238,587 + CCNA_01134 0.16 -1.7
1,238,595 - CCNA_01134 0.18 -1.9
1,238,600 - CCNA_01134 0.19 +0.2
1,238,607 + CCNA_01134 0.21 -0.4
1,238,617 + CCNA_01134 0.23 +3.1
1,238,638 - CCNA_01134 0.29 +2.4
1,238,687 - CCNA_01134 0.40 +0.3
1,238,716 - CCNA_01134 0.47 -0.1
1,238,754 - CCNA_01134 0.57 -1.0
1,238,809 + +1.4
1,238,819 + CCNA_01134 0.72 +1.8
1,238,834 + CCNA_01134 0.76 +0.1
1,238,838 + CCNA_01134 0.77 -0.6
1,238,859 + CCNA_01134 0.82 -0.6
1,238,877 - CCNA_01134 0.86 +0.3
1,238,887 - CCNA_01134 0.89 -2.2
1,238,901 + -1.0
1,238,913 + +0.4
1,238,913 + -0.1
1,238,935 + +0.4
1,238,936 + -0.3
1,238,953 - -1.9
1,238,970 + +0.8
1,238,970 + +0.4
1,238,970 + -1.1
1,239,000 + +0.1
1,239,058 + CCNA_01135 0.27 +0.2
1,239,058 + CCNA_01135 0.27 -0.9
1,239,058 + CCNA_01135 0.27 -0.6
1,239,060 + CCNA_01135 0.28 -0.6
1,239,060 + CCNA_01135 0.28 -1.0
1,239,068 - CCNA_01135 0.30 -1.2
1,239,068 - CCNA_01135 0.30 -0.2
1,239,167 - CCNA_01135 0.61 +2.4
1,239,167 - CCNA_01135 0.61 -0.0
1,239,182 - CCNA_01135 0.66 -1.5
1,239,256 - CCNA_01135 0.89 -0.2
1,239,269 + +0.4
1,239,277 - +0.8
1,239,316 + +1.4
1,239,322 + -0.4
1,239,322 + -0.4
1,239,371 - -0.6
1,239,384 + -1.2
1,239,384 + -0.0
1,239,384 + +0.1
1,239,392 - +0.1
1,239,392 - +0.8
1,239,392 - -1.2
1,239,392 - -1.7
1,239,392 - +1.4
1,239,392 - -0.4
1,239,414 + +0.4
1,239,433 - +0.8
1,239,436 + -0.2
1,239,441 + +0.6
1,239,462 + -1.3
1,239,470 + -1.9
1,239,499 + CCNA_01136 0.11 +0.4
1,239,514 - CCNA_01136 0.13 +1.4
1,239,519 - CCNA_01136 0.13 +0.4
1,239,584 + CCNA_01136 0.21 -0.5
1,239,584 + CCNA_01136 0.21 -0.7
1,239,591 + CCNA_01136 0.21 -0.6
1,239,592 - CCNA_01136 0.22 +1.9
1,239,592 - CCNA_01136 0.22 +2.7
1,239,592 - CCNA_01136 0.22 +2.3
1,239,600 - CCNA_01136 0.22 -0.8
1,239,600 - CCNA_01136 0.22 -0.9
1,239,601 + CCNA_01136 0.23 +1.1
1,239,637 - CCNA_01136 0.27 -1.3
1,239,639 - CCNA_01136 0.27 +0.8
1,239,703 - CCNA_01136 0.34 -1.2
1,239,713 - CCNA_01136 0.35 +1.4
1,239,745 - CCNA_01136 0.39 +0.8
1,239,782 - CCNA_01136 0.43 -0.4
1,239,819 + CCNA_01136 0.47 +2.4
1,239,830 + CCNA_01136 0.48 -1.4
1,239,837 - CCNA_01136 0.49 +0.4
1,239,839 + CCNA_01136 0.49 +0.1
1,239,855 + CCNA_01136 0.51 +0.0
1,239,859 + CCNA_01136 0.52 +0.1
1,239,860 + CCNA_01136 0.52 -0.4
1,239,860 + CCNA_01136 0.52 +0.7
1,239,860 + CCNA_01136 0.52 +2.8
1,239,868 - CCNA_01136 0.53 -2.0
1,239,874 + CCNA_01136 0.53 -0.6
1,239,910 + CCNA_01136 0.57 +0.6
1,239,920 + CCNA_01136 0.58 +1.6
1,239,920 + CCNA_01136 0.58 +1.2
1,239,939 + CCNA_01136 0.60 +0.6
1,239,947 - CCNA_01136 0.61 -0.9
1,239,966 + CCNA_01136 0.64 -3.0
1,239,966 + CCNA_01136 0.64 -1.6
1,239,976 + CCNA_01136 0.65 +0.8
1,239,976 + CCNA_01136 0.65 -0.7
1,239,976 + CCNA_01136 0.65 -1.9
1,239,976 + CCNA_01136 0.65 +0.4
1,239,984 - CCNA_01136 0.66 -0.2
1,239,984 - CCNA_01136 0.66 -0.4
1,239,984 - CCNA_01136 0.66 +0.5
1,239,984 - CCNA_01136 0.66 -0.7
1,239,984 - CCNA_01136 0.66 -1.3
1,239,984 - CCNA_01136 0.66 -0.4
1,239,984 - CCNA_01136 0.66 -0.2
1,239,984 - CCNA_01136 0.66 +0.3
1,239,989 - CCNA_01136 0.66 +0.1
1,240,000 - CCNA_01136 0.67 +0.1
1,240,028 + CCNA_01136 0.70 -2.3
1,240,036 - CCNA_01136 0.71 -1.0
1,240,066 - CCNA_01136 0.75 +2.4
1,240,068 - CCNA_01136 0.75 -1.0
1,240,109 - CCNA_01136 0.80 -0.6
1,240,129 + CCNA_01136 0.82 -0.4
1,240,132 - CCNA_01136 0.82 -0.2
1,240,145 + CCNA_01136 0.84 +1.8
1,240,195 + CCNA_01136 0.89 -0.9
1,240,195 + CCNA_01136 0.89 +0.8
1,240,195 + CCNA_01136 0.89 -1.5
1,240,195 + CCNA_01136 0.89 -1.1
1,240,210 + +0.4
1,240,234 - +1.9
1,240,254 + -0.9
1,240,254 + +0.1

Or see this region's nucleotide sequence