Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00990

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
1,070,588	+		CCNA_00989	0.49	-0.6
1,070,589	-		CCNA_00989	0.49	+0.4
1,070,595	-		CCNA_00989	0.49	+0.8
1,070,596	-		CCNA_00989	0.49	+0.4
1,070,598	+		CCNA_00989	0.49	-1.2
1,070,605	-		CCNA_00989	0.50	-0.4
1,070,634	+		CCNA_00989	0.51	-0.4
1,070,639	+		CCNA_00989	0.52	+0.6
1,070,639	+		CCNA_00989	0.52	-1.5
1,070,639	+		CCNA_00989	0.52	+0.8
1,070,642	-		CCNA_00989	0.52	+0.8
1,070,658	+		CCNA_00989	0.53	-0.9
1,070,764	+		CCNA_00989	0.58	+1.4
1,070,771	-		CCNA_00989	0.59	+0.4
1,070,771	-		CCNA_00989	0.59	-0.6
1,070,772	-		CCNA_00989	0.59	+0.6
1,070,892	+		CCNA_00989	0.65	-0.6
1,070,892	+		CCNA_00989	0.65	-0.6
1,070,900	-		CCNA_00989	0.65	-0.6
1,070,906	+		CCNA_00989	0.66	+0.7
1,070,906	+		CCNA_00989	0.66	-0.9
1,070,929	+		CCNA_00989	0.67	-1.2
1,071,012	-		CCNA_00989	0.71	+0.1
1,071,020	+		CCNA_00989	0.72	+1.2
1,071,028	-		CCNA_00989	0.72	+0.2
1,071,069	-		CCNA_00989	0.74	-0.9
1,071,080	+		CCNA_00989	0.75	-0.8
1,071,080	+		CCNA_00989	0.75	-0.2
1,071,115	+		CCNA_00989	0.77	+2.4
1,071,120	+		CCNA_00989	0.77	+1.1
1,071,120	+		CCNA_00989	0.77	-2.6
1,071,120	+		CCNA_00989	0.77	+2.4
1,071,120	+		CCNA_00989	0.77	+0.8
1,071,120	+		CCNA_00989	0.77	+0.4
1,071,120	+		CCNA_00989	0.77	-0.4
1,071,121	+		CCNA_00989	0.77	+0.2
1,071,123	-		CCNA_00989	0.77	-1.9
1,071,128	-		CCNA_00989	0.77	-0.0
1,071,129	-		CCNA_00989	0.77	-0.4
1,071,141	+		CCNA_00989	0.78	+0.6
1,071,141	+		CCNA_00989	0.78	-1.6
1,071,178	+		CCNA_00989	0.80	-1.7
1,071,205	+		CCNA_00989	0.81	-1.3
1,071,253	+		CCNA_00989	0.84	-1.1
1,071,253	+		CCNA_00989	0.84	-0.4
1,071,253	+		CCNA_00989	0.84	+0.1
1,071,253	+		CCNA_00989	0.84	-0.9
1,071,253	+		CCNA_00989	0.84	+0.4
1,071,253	+		CCNA_00989	0.84	-0.6
1,071,253	+		CCNA_00989	0.84	-1.1
1,071,261	-		CCNA_00989	0.84	-0.4
1,071,261	-		CCNA_00989	0.84	+0.8
1,071,261	-		CCNA_00989	0.84	-0.4
1,071,261	-		CCNA_00989	0.84	-0.5
1,071,261	-		CCNA_00989	0.84	+0.8
1,071,317	-		CCNA_00989	0.87	-1.6
1,071,341	-		CCNA_00989	0.89	-0.3
1,071,348	+		CCNA_00989	0.89	+0.6
1,071,355	-		CCNA_00989	0.89	+0.1
1,071,366	+		CCNA_00989	0.90	+0.4
1,071,471	+				-1.5
1,071,499	+				+1.0
1,071,514	+				+1.7
1,071,514	+				-0.5
1,071,519	+				+0.9
1,071,522	-				-2.3
1,071,561	-				-2.1
1,071,561	-				-0.8
1,071,561	-				-2.0
1,071,572	+				-0.6
1,071,580	+				+0.9
1,071,580	-				+0.4
1,071,580	-				-0.9
1,071,588	-				-0.2
1,071,590	+				+0.8
1,071,621	-				+1.7
1,071,640	+		CCNA_00990	0.12	-1.3
1,071,648	-		CCNA_00990	0.14	-2.7
1,071,658	+		CCNA_00990	0.16	+0.7
1,071,663	+		CCNA_00990	0.17	+0.1
1,071,684	-		CCNA_00990	0.22	-1.1
1,071,741	+		CCNA_00990	0.34	-0.8
1,071,743	-		CCNA_00990	0.34	-1.5
1,071,760	+		CCNA_00990	0.38	-0.2
1,071,762	-		CCNA_00990	0.38	-1.1
1,071,767	-		CCNA_00990	0.39	-1.1
1,071,774	-		CCNA_00990	0.41	-1.4
1,071,774	-		CCNA_00990	0.41	-0.7
1,071,851	+		CCNA_00990	0.57	-1.5
1,071,880	+		CCNA_00990	0.63	-1.9
1,071,885	+		CCNA_00990	0.64	-0.2
1,071,885	+		CCNA_00990	0.64	-0.6
1,071,888	-		CCNA_00990	0.65	-2.1
1,071,890	+		CCNA_00990	0.65	-2.1
1,071,893	-		CCNA_00990	0.66	-0.9
1,071,931	+		CCNA_00990	0.74	+0.2
1,071,935	-		CCNA_00990	0.75	-0.6
1,071,935	-		CCNA_00990	0.75	-0.2
1,071,958	+		CCNA_00990	0.80	-1.1
1,072,001	-		CCNA_00990	0.89	-0.6
1,072,002	-		CCNA_00990	0.89	+0.1
1,072,019	+				+1.4
1,072,025	+				-1.3
1,072,025	+				-2.7
1,072,029	+				-0.5
1,072,043	-				+1.2
1,072,069	-				+2.4
1,072,069	-				+2.4
1,072,069	-				-2.1
1,072,069	-				+1.4
1,072,069	-				+1.2
1,072,069	-				-0.2
1,072,069	-				-0.2
1,072,092	-				+1.4
1,072,107	+				-2.2
1,072,107	+				+0.4
1,072,115	-				-0.5
1,072,115	-				+0.5
1,072,125	-				-0.0
1,072,125	-				-0.6
1,072,125	-				+0.4
1,072,143	-				-0.2
1,072,143	-				+1.4
1,072,150	+				+0.8
1,072,158	-				+1.2
1,072,198	-		CCNA_00991	0.19	+2.4
1,072,226	-		CCNA_00991	0.25	-1.9
1,072,267	+		CCNA_00991	0.34	-0.4
1,072,267	+		CCNA_00991	0.34	+0.4
1,072,275	-		CCNA_00991	0.36	+0.6
1,072,275	-		CCNA_00991	0.36	-0.2
1,072,275	-		CCNA_00991	0.36	+0.2
1,072,287	-		CCNA_00991	0.39	+0.3
1,072,310	-		CCNA_00991	0.44	+0.0
1,072,315	+		CCNA_00991	0.45	-0.8
1,072,322	+		CCNA_00991	0.47	-0.4
1,072,329	+		CCNA_00991	0.48	-0.3
1,072,337	-		CCNA_00991	0.50	+0.4
1,072,341	-		CCNA_00991	0.51	-2.8
1,072,369	+		CCNA_00991	0.57	+0.1
1,072,376	-		CCNA_00991	0.59	-1.4
1,072,376	-		CCNA_00991	0.59	+2.4
1,072,377	-		CCNA_00991	0.59	-0.0
1,072,381	-		CCNA_00991	0.60	+0.4
1,072,417	+		CCNA_00991	0.68	+0.8
1,072,467	+		CCNA_00991	0.79	+0.8
1,072,475	-		CCNA_00991	0.81	+0.4
1,072,477	+		CCNA_00991	0.81	-0.3
1,072,477	+		CCNA_00991	0.81	-0.3
1,072,540	+				-0.4
1,072,554	-				-1.2
1,072,631	+				-1.0
1,072,650	+				-0.4
1,072,658	-				-0.9
1,072,668	-				+1.9
1,072,671	-				+0.6
1,072,676	+				-1.0
1,072,676	+				+0.4
1,072,676	+				+0.4
1,072,684	-				+2.1
1,072,689	+				+2.4
1,072,697	-				+3.0
1,072,697	-				+1.6
1,072,697	-				+2.1
1,072,699	+				-1.6
1,072,707	-				+2.0
1,072,726	-				+2.6
1,072,727	-		CCNA_00992	0.10	+2.0
1,072,735	+				+0.8
1,072,737	+		CCNA_00992	0.11	+0.8
1,072,743	-		CCNA_00992	0.12	+1.9
1,072,769	-		CCNA_00992	0.14	+2.2
1,072,773	+		CCNA_00992	0.15	-0.6
1,072,783	+		CCNA_00992	0.16	-0.3
1,072,801	+		CCNA_00992	0.17	+0.6
1,072,824	-		CCNA_00992	0.20	+2.3
1,072,824	-		CCNA_00992	0.20	+2.0
1,072,824	-		CCNA_00992	0.20	+2.3
1,072,824	-		CCNA_00992	0.20	+1.5
1,072,824	-		CCNA_00992	0.20	+3.1
1,072,854	-		CCNA_00992	0.23	+0.6
1,072,885	-		CCNA_00992	0.26	+2.2
1,072,885	-		CCNA_00992	0.26	+1.4
1,072,895	+		CCNA_00992	0.27	+2.4
1,072,903	-		CCNA_00992	0.27	+2.2
1,072,915	-		CCNA_00992	0.29	+1.7
1,072,915	-		CCNA_00992	0.29	+0.3
1,072,964	+		CCNA_00992	0.33	-0.2
1,072,964	+		CCNA_00992	0.33	-0.6
1,072,964	+		CCNA_00992	0.33	+1.4
1,072,964	+		CCNA_00992	0.33	-0.5
1,072,964	+		CCNA_00992	0.33	+0.4
1,072,972	-		CCNA_00992	0.34	+1.9
1,073,036	+		CCNA_00992	0.41	-0.8
1,073,036	+		CCNA_00992	0.41	+0.1
1,073,036	+		CCNA_00992	0.41	+0.1
1,073,044	-		CCNA_00992	0.41	+1.5