Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00877

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00874 and CCNA_00875 are separated by 6 nucleotidesCCNA_00875 and CCNA_00876 overlap by 22 nucleotidesCCNA_00876 and CCNA_00877 are separated by 31 nucleotidesCCNA_00877 and CCNA_00878 are separated by 272 nucleotides CCNA_00874: CCNA_00874 - biotin synthesis protein bioC, at 952,833 to 953,744 _00874 CCNA_00875: CCNA_00875 - Flp/Fap pilin component protein, at 953,751 to 953,924 _00875 CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307 _00876 CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947 _00877 CCNA_00878: CCNA_00878 - ATP-dependent RNA helicase, at 955,220 to 956,650 _00878 Position (kb) 954 955Strain fitness (log2 ratio) -2 -1 0 1 2at 953.632 kb on + strand, within CCNA_00874at 953.687 kb on - strandat 953.687 kb on - strandat 953.707 kb on + strandat 953.747 kb on + strandat 953.823 kb on + strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.831 kb on - strand, within CCNA_00875at 953.831 kb on - strand, within CCNA_00875at 953.833 kb on + strand, within CCNA_00875at 953.833 kb on + strand, within CCNA_00875at 953.838 kb on + strand, within CCNA_00875at 953.838 kb on + strand, within CCNA_00875at 953.841 kb on - strand, within CCNA_00875at 953.841 kb on - strand, within CCNA_00875at 953.846 kb on - strand, within CCNA_00875at 953.875 kb on + strand, within CCNA_00875at 953.904 kb on - strandat 953.966 kb on - strand, within CCNA_00876at 953.984 kb on - strand, within CCNA_00876at 954.021 kb on - strand, within CCNA_00876at 954.097 kb on + strand, within CCNA_00876at 954.102 kb on + strand, within CCNA_00876at 954.105 kb on - strand, within CCNA_00876at 954.206 kb on - strand, within CCNA_00876at 954.242 kb on + strand, within CCNA_00876at 954.266 kb on + strand, within CCNA_00876at 954.279 kb on - strandat 954.302 kb on + strandat 954.304 kb on - strandat 954.304 kb on - strandat 954.335 kb on - strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.362 kb on + strandat 954.365 kb on - strandat 954.367 kb on + strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.447 kb on - strand, within CCNA_00877at 954.447 kb on - strand, within CCNA_00877at 954.497 kb on + strand, within CCNA_00877at 954.580 kb on + strand, within CCNA_00877at 954.580 kb on + strand, within CCNA_00877at 954.580 kb on + strand, within CCNA_00877at 954.588 kb on - strand, within CCNA_00877at 954.594 kb on - strand, within CCNA_00877at 954.609 kb on - strand, within CCNA_00877at 954.663 kb on - strand, within CCNA_00877at 954.690 kb on - strand, within CCNA_00877at 954.695 kb on - strand, within CCNA_00877at 954.698 kb on - strand, within CCNA_00877at 954.698 kb on - strand, within CCNA_00877at 954.698 kb on - strand, within CCNA_00877at 954.705 kb on - strand, within CCNA_00877at 954.707 kb on + strand, within CCNA_00877at 954.708 kb on - strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.723 kb on - strand, within CCNA_00877at 954.736 kb on + strand, within CCNA_00877at 954.744 kb on - strand, within CCNA_00877at 954.744 kb on - strand, within CCNA_00877at 954.798 kb on + strand, within CCNA_00877at 954.809 kb on + strandat 954.817 kb on - strand, within CCNA_00877at 954.862 kb on + strand, within CCNA_00877at 954.867 kb on + strand, within CCNA_00877at 954.870 kb on - strand, within CCNA_00877at 954.870 kb on - strand, within CCNA_00877at 954.870 kb on - strand, within CCNA_00877at 954.893 kb on + strandat 954.901 kb on - strandat 954.901 kb on - strandat 954.901 kb on - strandat 954.906 kb on - strandat 954.911 kb on + strandat 954.919 kb on - strandat 954.919 kb on - strandat 954.942 kb on + strandat 954.950 kb on - strandat 954.950 kb on - strandat 954.950 kb on - strandat 954.965 kb on - strandat 955.069 kb on - strandat 955.084 kb on + strandat 955.097 kb on - strandat 955.190 kb on + strandat 955.198 kb on - strandat 955.207 kb on + strandat 955.212 kb on + strandat 955.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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953,632 + CCNA_00874 0.88 +0.5
953,687 - +0.9
953,687 - +1.0
953,707 + +2.5
953,747 + -0.4
953,823 + CCNA_00875 0.41 +0.9
953,823 + CCNA_00875 0.41 -0.1
953,831 - CCNA_00875 0.46 -0.9
953,831 - CCNA_00875 0.46 -0.2
953,833 + CCNA_00875 0.47 -0.4
953,833 + CCNA_00875 0.47 +0.6
953,838 + CCNA_00875 0.50 -1.2
953,838 + CCNA_00875 0.50 -0.5
953,841 - CCNA_00875 0.52 +0.3
953,841 - CCNA_00875 0.52 -1.0
953,846 - CCNA_00875 0.55 +0.9
953,875 + CCNA_00875 0.71 +0.0
953,904 - +0.9
953,966 - CCNA_00876 0.16 -0.5
953,984 - CCNA_00876 0.20 +0.4
954,021 - CCNA_00876 0.29 +0.4
954,097 + CCNA_00876 0.48 +1.4
954,102 + CCNA_00876 0.49 -0.1
954,105 - CCNA_00876 0.50 -2.4
954,206 - CCNA_00876 0.75 -0.3
954,242 + CCNA_00876 0.84 +1.4
954,266 + CCNA_00876 0.90 +0.3
954,279 - -1.4
954,302 + +0.9
954,304 - -0.9
954,304 - -0.3
954,335 - +2.0
954,337 + +0.9
954,337 + +0.9
954,337 + +0.4
954,337 + -1.8
954,337 + -0.6
954,337 + +0.9
954,337 + -0.1
954,337 + -1.0
954,345 - +2.7
954,345 - -1.1
954,345 - -1.8
954,345 - +0.7
954,345 - -1.9
954,345 - +0.4
954,345 - +0.9
954,362 + +0.9
954,365 - -1.1
954,367 + +2.4
954,370 - -0.9
954,370 - -1.3
954,370 - -1.3
954,370 - +1.4
954,370 - -0.4
954,447 - CCNA_00877 0.18 -0.2
954,447 - CCNA_00877 0.18 -1.0
954,497 + CCNA_00877 0.26 -1.6
954,580 + CCNA_00877 0.40 -1.5
954,580 + CCNA_00877 0.40 -1.0
954,580 + CCNA_00877 0.40 -1.2
954,588 - CCNA_00877 0.41 +0.6
954,594 - CCNA_00877 0.42 -1.4
954,609 - CCNA_00877 0.44 -0.4
954,663 - CCNA_00877 0.53 -0.7
954,690 - CCNA_00877 0.58 -0.4
954,695 - CCNA_00877 0.58 +1.5
954,698 - CCNA_00877 0.59 +0.9
954,698 - CCNA_00877 0.59 -0.4
954,698 - CCNA_00877 0.59 +2.5
954,705 - CCNA_00877 0.60 -1.4
954,707 + CCNA_00877 0.60 -0.9
954,708 - CCNA_00877 0.61 -0.9
954,715 + CCNA_00877 0.62 +0.1
954,715 + CCNA_00877 0.62 -1.1
954,715 + CCNA_00877 0.62 -0.4
954,715 + CCNA_00877 0.62 -0.9
954,723 - CCNA_00877 0.63 +0.6
954,736 + CCNA_00877 0.65 -0.6
954,744 - CCNA_00877 0.67 +1.5
954,744 - CCNA_00877 0.67 +0.1
954,798 + CCNA_00877 0.75 +1.5
954,809 + +0.5
954,817 - CCNA_00877 0.78 -0.0
954,862 + CCNA_00877 0.86 -2.7
954,867 + CCNA_00877 0.87 -1.5
954,870 - CCNA_00877 0.87 -0.9
954,870 - CCNA_00877 0.87 +0.1
954,870 - CCNA_00877 0.87 +0.0
954,893 + -0.5
954,901 - -0.5
954,901 - -1.5
954,901 - -0.0
954,906 - +0.1
954,911 + +0.9
954,919 - +0.6
954,919 - +0.1
954,942 + -0.2
954,950 - +0.1
954,950 - +0.5
954,950 - -0.4
954,965 - -1.5
955,069 - +0.5
955,084 + +2.5
955,097 - -1.1
955,190 + +0.7
955,198 - +0.9
955,207 + -1.5
955,212 + +0.4
955,356 + +1.3

Or see this region's nucleotide sequence