Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
Position (kb)
799
800 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 798.485 kb on + strand at 798.501 kb on + strand at 798.508 kb on - strand at 798.511 kb on + strand at 798.511 kb on + strand at 798.519 kb on - strand at 798.519 kb on - strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.481 kb on - strand at 799.516 kb on - strand, within CCNA_00741 at 799.517 kb on - strand, within CCNA_00741 at 799.543 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.630 kb on + strand, within CCNA_00741 at 799.632 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.638 kb on - strand, within CCNA_00741 at 799.660 kb on + strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.689 kb on - strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.725 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.753 kb on - strand, within CCNA_00741 at 799.772 kb on - strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.808 kb on - strand, within CCNA_00741 at 799.863 kb on + strand at 799.881 kb on - strand at 799.885 kb on + strand at 799.909 kb on + strand at 799.912 kb on - strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742 at 800.460 kb on - strand, within CCNA_00742 at 800.471 kb on - strand, within CCNA_00742 at 800.473 kb on - strand, within CCNA_00742 at 800.502 kb on + strand, within CCNA_00742 at 800.514 kb on + strand, within CCNA_00742 at 800.520 kb on + strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.568 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.629 kb on + strand, within CCNA_00742 at 800.655 kb on + strand, within CCNA_00742 at 800.660 kb on + strand, within CCNA_00742 at 800.663 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.693 kb on - strand, within CCNA_00742 at 800.702 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.743 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.858 kb on - strand at 800.863 kb on - strand at 800.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 798,485 + +1.0 798,501 + +0.6 798,508 - +1.1 798,511 + -0.9 798,511 + -0.2 798,519 - +1.7 798,519 - +1.6 799,441 + +2.6 799,441 + +0.3 799,441 + -1.1 799,441 + +1.6 799,449 - +0.5 799,449 - +0.5 799,481 - +1.0 799,516 - CCNA_00741 0.15 +0.5 799,517 - CCNA_00741 0.15 +1.9 799,543 - CCNA_00741 0.21 +1.1 799,552 - CCNA_00741 0.23 +1.2 799,552 - CCNA_00741 0.23 +0.9 799,607 - CCNA_00741 0.36 -0.1 799,626 + CCNA_00741 0.40 +0.1 799,626 + CCNA_00741 0.40 -1.0 799,626 + CCNA_00741 0.40 -0.7 799,626 + CCNA_00741 0.40 -0.1 799,626 + CCNA_00741 0.40 -0.4 799,630 + CCNA_00741 0.41 +0.3 799,632 - CCNA_00741 0.42 +1.0 799,634 - CCNA_00741 0.42 +0.3 799,634 - CCNA_00741 0.42 +1.0 799,634 - CCNA_00741 0.42 +0.7 799,634 - CCNA_00741 0.42 +1.6 799,638 - CCNA_00741 0.43 +1.6 799,660 + CCNA_00741 0.48 +0.6 799,670 - CCNA_00741 0.51 +0.6 799,670 - CCNA_00741 0.51 +3.6 799,670 - CCNA_00741 0.51 +3.9 799,689 - CCNA_00741 0.55 +0.0 799,720 + CCNA_00741 0.62 +0.3 799,720 + CCNA_00741 0.62 +1.6 799,725 + CCNA_00741 0.64 -0.2 799,728 - CCNA_00741 0.64 +1.0 799,728 - CCNA_00741 0.64 +1.2 799,730 + CCNA_00741 0.65 -0.2 799,753 - CCNA_00741 0.70 +1.5 799,772 - CCNA_00741 0.75 +0.6 799,783 + CCNA_00741 0.77 -0.2 799,783 + CCNA_00741 0.77 -0.1 799,808 - CCNA_00741 0.83 +2.5 799,863 + -0.2 799,881 - +1.0 799,885 + +0.0 799,909 + +1.6 799,912 - +1.3 799,914 + +0.6 799,914 + -1.2 799,914 + -1.8 799,914 + +0.2 799,914 + +0.3 799,917 - +0.5 799,917 - +1.5 799,922 - +2.1 799,922 - +0.3 799,922 - +1.6 799,922 - +0.6 799,946 - +0.2 799,979 - -0.2 799,985 + +0.3 799,985 - -0.1 799,993 - +0.6 800,054 + CCNA_00742 0.14 +1.0 800,097 + CCNA_00742 0.19 +1.0 800,193 + CCNA_00742 0.30 +1.0 800,198 + CCNA_00742 0.30 +1.6 800,211 - CCNA_00742 0.32 -0.4 800,211 - CCNA_00742 0.32 +0.0 800,261 - CCNA_00742 0.38 -0.5 800,302 - CCNA_00742 0.42 -0.5 800,317 - CCNA_00742 0.44 -0.1 800,330 - CCNA_00742 0.46 -2.0 800,332 - CCNA_00742 0.46 -0.4 800,352 + CCNA_00742 0.48 +0.3 800,360 - CCNA_00742 0.49 -2.0 800,394 + CCNA_00742 0.53 +2.6 800,402 - CCNA_00742 0.54 -0.2 800,417 - CCNA_00742 0.56 +1.3 800,425 - CCNA_00742 0.57 +1.0 800,438 - CCNA_00742 0.58 -0.1 800,460 - CCNA_00742 0.61 +0.3 800,471 - CCNA_00742 0.62 -1.6 800,473 - CCNA_00742 0.62 +1.3 800,502 + CCNA_00742 0.66 +1.0 800,514 + CCNA_00742 0.67 +1.0 800,520 + CCNA_00742 0.68 +1.4 800,528 - CCNA_00742 0.69 -1.6 800,555 + CCNA_00742 0.72 +1.6 800,555 + CCNA_00742 0.72 -0.6 800,568 - CCNA_00742 0.73 -0.2 800,600 - CCNA_00742 0.77 -1.3 800,600 - CCNA_00742 0.77 -0.6 800,600 - CCNA_00742 0.77 +0.9 800,629 + CCNA_00742 0.80 +1.0 800,655 + CCNA_00742 0.83 +0.6 800,660 + CCNA_00742 0.84 +2.6 800,663 - CCNA_00742 0.84 -0.1 800,668 - CCNA_00742 0.85 -1.0 800,693 - CCNA_00742 0.88 +0.3 800,702 + CCNA_00742 0.89 +1.6 800,735 - +2.6 800,743 + +1.0 800,855 + -0.4 800,855 + +1.6 800,858 - -1.6 800,863 - +2.6 800,863 - -2.7
Or see this region's nucleotide sequence