Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00741

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00740 and CCNA_00741 overlap by 1 nucleotidesCCNA_00741 and CCNA_00742 are separated by 57 nucleotides CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454 _00740 CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879 _00741 CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797 _00742 Position (kb) 799 800Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 798.485 kb on + strandat 798.501 kb on + strandat 798.508 kb on - strandat 798.511 kb on + strandat 798.511 kb on + strandat 798.519 kb on - strandat 798.519 kb on - strandat 799.441 kb on + strandat 799.441 kb on + strandat 799.441 kb on + strandat 799.441 kb on + strandat 799.449 kb on - strandat 799.449 kb on - strandat 799.481 kb on - strandat 799.516 kb on - strand, within CCNA_00741at 799.517 kb on - strand, within CCNA_00741at 799.543 kb on - strand, within CCNA_00741at 799.552 kb on - strand, within CCNA_00741at 799.552 kb on - strand, within CCNA_00741at 799.607 kb on - strand, within CCNA_00741at 799.626 kb on + strand, within CCNA_00741at 799.626 kb on + strand, within CCNA_00741at 799.626 kb on + strand, within CCNA_00741at 799.626 kb on + strand, within CCNA_00741at 799.626 kb on + strand, within CCNA_00741at 799.630 kb on + strand, within CCNA_00741at 799.632 kb on - strand, within CCNA_00741at 799.634 kb on - strand, within CCNA_00741at 799.634 kb on - strand, within CCNA_00741at 799.634 kb on - strand, within CCNA_00741at 799.634 kb on - strand, within CCNA_00741at 799.638 kb on - strand, within CCNA_00741at 799.660 kb on + strand, within CCNA_00741at 799.670 kb on - strand, within CCNA_00741at 799.670 kb on - strand, within CCNA_00741at 799.670 kb on - strand, within CCNA_00741at 799.689 kb on - strand, within CCNA_00741at 799.720 kb on + strand, within CCNA_00741at 799.720 kb on + strand, within CCNA_00741at 799.725 kb on + strand, within CCNA_00741at 799.728 kb on - strand, within CCNA_00741at 799.728 kb on - strand, within CCNA_00741at 799.730 kb on + strand, within CCNA_00741at 799.753 kb on - strand, within CCNA_00741at 799.772 kb on - strand, within CCNA_00741at 799.783 kb on + strand, within CCNA_00741at 799.783 kb on + strand, within CCNA_00741at 799.808 kb on - strand, within CCNA_00741at 799.863 kb on + strandat 799.881 kb on - strandat 799.885 kb on + strandat 799.909 kb on + strandat 799.912 kb on - strandat 799.914 kb on + strandat 799.914 kb on + strandat 799.914 kb on + strandat 799.914 kb on + strandat 799.914 kb on + strandat 799.917 kb on - strandat 799.917 kb on - strandat 799.922 kb on - strandat 799.922 kb on - strandat 799.922 kb on - strandat 799.922 kb on - strandat 799.946 kb on - strandat 799.979 kb on - strandat 799.985 kb on + strandat 799.985 kb on - strandat 799.993 kb on - strandat 800.054 kb on + strand, within CCNA_00742at 800.097 kb on + strand, within CCNA_00742at 800.193 kb on + strand, within CCNA_00742at 800.198 kb on + strand, within CCNA_00742at 800.211 kb on - strand, within CCNA_00742at 800.211 kb on - strand, within CCNA_00742at 800.261 kb on - strand, within CCNA_00742at 800.302 kb on - strand, within CCNA_00742at 800.317 kb on - strand, within CCNA_00742at 800.330 kb on - strand, within CCNA_00742at 800.332 kb on - strand, within CCNA_00742at 800.352 kb on + strand, within CCNA_00742at 800.360 kb on - strand, within CCNA_00742at 800.394 kb on + strand, within CCNA_00742at 800.402 kb on - strand, within CCNA_00742at 800.417 kb on - strand, within CCNA_00742at 800.425 kb on - strand, within CCNA_00742at 800.438 kb on - strand, within CCNA_00742at 800.460 kb on - strand, within CCNA_00742at 800.471 kb on - strand, within CCNA_00742at 800.473 kb on - strand, within CCNA_00742at 800.502 kb on + strand, within CCNA_00742at 800.514 kb on + strand, within CCNA_00742at 800.520 kb on + strand, within CCNA_00742at 800.528 kb on - strand, within CCNA_00742at 800.555 kb on + strand, within CCNA_00742at 800.555 kb on + strand, within CCNA_00742at 800.568 kb on - strand, within CCNA_00742at 800.600 kb on - strand, within CCNA_00742at 800.600 kb on - strand, within CCNA_00742at 800.600 kb on - strand, within CCNA_00742at 800.629 kb on + strand, within CCNA_00742at 800.655 kb on + strand, within CCNA_00742at 800.660 kb on + strand, within CCNA_00742at 800.663 kb on - strand, within CCNA_00742at 800.668 kb on - strand, within CCNA_00742at 800.693 kb on - strand, within CCNA_00742at 800.702 kb on + strand, within CCNA_00742at 800.735 kb on - strandat 800.743 kb on + strandat 800.855 kb on + strandat 800.855 kb on + strandat 800.858 kb on - strandat 800.863 kb on - strandat 800.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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798,485 + +1.0
798,501 + +0.6
798,508 - +1.1
798,511 + -0.9
798,511 + -0.2
798,519 - +1.7
798,519 - +1.6
799,441 + +2.6
799,441 + +0.3
799,441 + -1.1
799,441 + +1.6
799,449 - +0.5
799,449 - +0.5
799,481 - +1.0
799,516 - CCNA_00741 0.15 +0.5
799,517 - CCNA_00741 0.15 +1.9
799,543 - CCNA_00741 0.21 +1.1
799,552 - CCNA_00741 0.23 +1.2
799,552 - CCNA_00741 0.23 +0.9
799,607 - CCNA_00741 0.36 -0.1
799,626 + CCNA_00741 0.40 +0.1
799,626 + CCNA_00741 0.40 -1.0
799,626 + CCNA_00741 0.40 -0.7
799,626 + CCNA_00741 0.40 -0.1
799,626 + CCNA_00741 0.40 -0.4
799,630 + CCNA_00741 0.41 +0.3
799,632 - CCNA_00741 0.42 +1.0
799,634 - CCNA_00741 0.42 +0.3
799,634 - CCNA_00741 0.42 +1.0
799,634 - CCNA_00741 0.42 +0.7
799,634 - CCNA_00741 0.42 +1.6
799,638 - CCNA_00741 0.43 +1.6
799,660 + CCNA_00741 0.48 +0.6
799,670 - CCNA_00741 0.51 +0.6
799,670 - CCNA_00741 0.51 +3.6
799,670 - CCNA_00741 0.51 +3.9
799,689 - CCNA_00741 0.55 +0.0
799,720 + CCNA_00741 0.62 +0.3
799,720 + CCNA_00741 0.62 +1.6
799,725 + CCNA_00741 0.64 -0.2
799,728 - CCNA_00741 0.64 +1.0
799,728 - CCNA_00741 0.64 +1.2
799,730 + CCNA_00741 0.65 -0.2
799,753 - CCNA_00741 0.70 +1.5
799,772 - CCNA_00741 0.75 +0.6
799,783 + CCNA_00741 0.77 -0.2
799,783 + CCNA_00741 0.77 -0.1
799,808 - CCNA_00741 0.83 +2.5
799,863 + -0.2
799,881 - +1.0
799,885 + +0.0
799,909 + +1.6
799,912 - +1.3
799,914 + +0.6
799,914 + -1.2
799,914 + -1.8
799,914 + +0.2
799,914 + +0.3
799,917 - +0.5
799,917 - +1.5
799,922 - +2.1
799,922 - +0.3
799,922 - +1.6
799,922 - +0.6
799,946 - +0.2
799,979 - -0.2
799,985 + +0.3
799,985 - -0.1
799,993 - +0.6
800,054 + CCNA_00742 0.14 +1.0
800,097 + CCNA_00742 0.19 +1.0
800,193 + CCNA_00742 0.30 +1.0
800,198 + CCNA_00742 0.30 +1.6
800,211 - CCNA_00742 0.32 -0.4
800,211 - CCNA_00742 0.32 +0.0
800,261 - CCNA_00742 0.38 -0.5
800,302 - CCNA_00742 0.42 -0.5
800,317 - CCNA_00742 0.44 -0.1
800,330 - CCNA_00742 0.46 -2.0
800,332 - CCNA_00742 0.46 -0.4
800,352 + CCNA_00742 0.48 +0.3
800,360 - CCNA_00742 0.49 -2.0
800,394 + CCNA_00742 0.53 +2.6
800,402 - CCNA_00742 0.54 -0.2
800,417 - CCNA_00742 0.56 +1.3
800,425 - CCNA_00742 0.57 +1.0
800,438 - CCNA_00742 0.58 -0.1
800,460 - CCNA_00742 0.61 +0.3
800,471 - CCNA_00742 0.62 -1.6
800,473 - CCNA_00742 0.62 +1.3
800,502 + CCNA_00742 0.66 +1.0
800,514 + CCNA_00742 0.67 +1.0
800,520 + CCNA_00742 0.68 +1.4
800,528 - CCNA_00742 0.69 -1.6
800,555 + CCNA_00742 0.72 +1.6
800,555 + CCNA_00742 0.72 -0.6
800,568 - CCNA_00742 0.73 -0.2
800,600 - CCNA_00742 0.77 -1.3
800,600 - CCNA_00742 0.77 -0.6
800,600 - CCNA_00742 0.77 +0.9
800,629 + CCNA_00742 0.80 +1.0
800,655 + CCNA_00742 0.83 +0.6
800,660 + CCNA_00742 0.84 +2.6
800,663 - CCNA_00742 0.84 -0.1
800,668 - CCNA_00742 0.85 -1.0
800,693 - CCNA_00742 0.88 +0.3
800,702 + CCNA_00742 0.89 +1.6
800,735 - +2.6
800,743 + +1.0
800,855 + -0.4
800,855 + +1.6
800,858 - -1.6
800,863 - +2.6
800,863 - -2.7

Or see this region's nucleotide sequence