Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00723 and CCNA_00724 are separated by 18 nucleotides CCNA_00724 and CCNA_00725 are separated by 200 nucleotides CCNA_00725 and CCNA_00726 are separated by 50 nucleotides
CCNA_00723: CCNA_00723 - glyoxalase family protein, at 780,108 to 780,302
_00723
CCNA_00724: CCNA_00724 - hypothetical protein, at 780,321 to 780,749
_00724
CCNA_00725: CCNA_00725 - O6-methylguanine-DNA methyltransferase, at 780,950 to 781,612
_00725
CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970
_00726
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 779.990 kb on - strand at 780.040 kb on - strand at 780.075 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.090 kb on + strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.098 kb on - strand at 780.114 kb on + strand at 780.116 kb on + strand at 780.122 kb on - strand at 780.124 kb on - strand at 780.132 kb on - strand, within CCNA_00723 at 780.141 kb on + strand, within CCNA_00723 at 780.141 kb on + strand, within CCNA_00723 at 780.202 kb on + strand, within CCNA_00723 at 780.233 kb on + strand, within CCNA_00723 at 780.233 kb on + strand, within CCNA_00723 at 780.235 kb on + strand, within CCNA_00723 at 780.241 kb on - strand, within CCNA_00723 at 780.241 kb on - strand, within CCNA_00723 at 780.241 kb on - strand, within CCNA_00723 at 780.286 kb on + strand at 780.316 kb on - strand at 780.344 kb on + strand at 780.391 kb on - strand, within CCNA_00724 at 780.416 kb on + strand, within CCNA_00724 at 780.416 kb on + strand, within CCNA_00724 at 780.416 kb on + strand, within CCNA_00724 at 780.422 kb on - strand, within CCNA_00724 at 780.424 kb on + strand, within CCNA_00724 at 780.424 kb on - strand, within CCNA_00724 at 780.424 kb on - strand, within CCNA_00724 at 780.434 kb on + strand, within CCNA_00724 at 780.434 kb on + strand, within CCNA_00724 at 780.448 kb on + strand, within CCNA_00724 at 780.456 kb on - strand, within CCNA_00724 at 780.456 kb on - strand, within CCNA_00724 at 780.456 kb on - strand, within CCNA_00724 at 780.456 kb on - strand, within CCNA_00724 at 780.485 kb on + strand, within CCNA_00724 at 780.485 kb on + strand, within CCNA_00724 at 780.519 kb on - strand, within CCNA_00724 at 780.521 kb on + strand, within CCNA_00724 at 780.530 kb on - strand, within CCNA_00724 at 780.534 kb on - strand, within CCNA_00724 at 780.555 kb on + strand, within CCNA_00724 at 780.561 kb on + strand, within CCNA_00724 at 780.561 kb on + strand, within CCNA_00724 at 780.561 kb on + strand, within CCNA_00724 at 780.561 kb on + strand, within CCNA_00724 at 780.561 kb on + strand, within CCNA_00724 at 780.562 kb on + strand, within CCNA_00724 at 780.563 kb on - strand, within CCNA_00724 at 780.569 kb on - strand, within CCNA_00724 at 780.570 kb on - strand, within CCNA_00724 at 780.570 kb on - strand, within CCNA_00724 at 780.575 kb on - strand, within CCNA_00724 at 780.583 kb on + strand, within CCNA_00724 at 780.657 kb on + strand, within CCNA_00724 at 780.670 kb on - strand, within CCNA_00724 at 780.677 kb on - strand, within CCNA_00724 at 780.682 kb on - strand, within CCNA_00724 at 780.703 kb on - strand, within CCNA_00724 at 780.737 kb on + strand at 780.738 kb on + strand at 780.743 kb on + strand at 780.743 kb on + strand at 780.751 kb on - strand at 780.751 kb on - strand at 780.860 kb on + strand at 780.882 kb on + strand at 780.948 kb on + strand at 780.956 kb on - strand at 780.989 kb on + strand at 781.079 kb on - strand, within CCNA_00725 at 781.124 kb on + strand, within CCNA_00725 at 781.129 kb on + strand, within CCNA_00725 at 781.129 kb on + strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.148 kb on - strand, within CCNA_00725 at 781.166 kb on + strand, within CCNA_00725 at 781.174 kb on - strand, within CCNA_00725 at 781.220 kb on - strand, within CCNA_00725 at 781.220 kb on - strand, within CCNA_00725 at 781.225 kb on - strand, within CCNA_00725 at 781.317 kb on - strand, within CCNA_00725 at 781.356 kb on - strand, within CCNA_00725 at 781.394 kb on - strand, within CCNA_00725 at 781.409 kb on - strand, within CCNA_00725 at 781.418 kb on - strand, within CCNA_00725 at 781.450 kb on - strand, within CCNA_00725 at 781.481 kb on - strand, within CCNA_00725 at 781.513 kb on + strand, within CCNA_00725 at 781.613 kb on - strand at 781.689 kb on - strand at 781.689 kb on - strand at 781.717 kb on + strand at 781.718 kb on - strand at 781.736 kb on + strand at 781.762 kb on - strand at 781.770 kb on - strand at 781.772 kb on - strand at 781.783 kb on - strand at 781.797 kb on + strand, within CCNA_00726 at 781.817 kb on + strand, within CCNA_00726 at 781.817 kb on + strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.827 kb on + strand, within CCNA_00726 at 781.827 kb on + strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.848 kb on - strand, within CCNA_00726 at 781.861 kb on + strand, within CCNA_00726 at 781.897 kb on + strand, within CCNA_00726 at 781.910 kb on + strand, within CCNA_00726 at 781.918 kb on - strand, within CCNA_00726 at 781.923 kb on - strand, within CCNA_00726 at 781.934 kb on + strand, within CCNA_00726 at 781.981 kb on - strand, within CCNA_00726 at 782.022 kb on - strand, within CCNA_00726 at 782.036 kb on - strand, within CCNA_00726 at 782.040 kb on - strand, within CCNA_00726 at 782.063 kb on + strand, within CCNA_00726 at 782.070 kb on + strand, within CCNA_00726 at 782.164 kb on - strand, within CCNA_00726 at 782.175 kb on - strand, within CCNA_00726 at 782.175 kb on - strand, within CCNA_00726 at 782.186 kb on - strand, within CCNA_00726 at 782.210 kb on - strand, within CCNA_00726 at 782.234 kb on + strand, within CCNA_00726 at 782.254 kb on - strand, within CCNA_00726 at 782.260 kb on - strand, within CCNA_00726 at 782.265 kb on - strand, within CCNA_00726 at 782.279 kb on - strand at 782.279 kb on - strand, within CCNA_00726 at 782.349 kb on - strand, within CCNA_00726 at 782.386 kb on - strand, within CCNA_00726 at 782.421 kb on + strand, within CCNA_00726 at 782.429 kb on - strand, within CCNA_00726 at 782.429 kb on - strand, within CCNA_00726 at 782.483 kb on - strand, within CCNA_00726 at 782.490 kb on - strand, within CCNA_00726 at 782.490 kb on - strand, within CCNA_00726 at 782.507 kb on - strand, within CCNA_00726 at 782.507 kb on - strand, within CCNA_00726 at 782.512 kb on - strand, within CCNA_00726 at 782.517 kb on - strand, within CCNA_00726 at 782.525 kb on + strand, within CCNA_00726
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 779,990 - +3.8 780,040 - +4.0 780,075 + -2.0 780,090 + +0.4 780,090 + -0.0 780,090 + -1.0 780,090 + +1.1 780,090 + -1.2 780,090 + +0.5 780,090 + -0.4 780,098 - +0.4 780,098 - +0.1 780,098 - +0.9 780,098 - +0.8 780,098 - +1.2 780,098 - +1.9 780,098 - +1.3 780,098 - +0.3 780,098 - +1.1 780,098 - +0.4 780,098 - +0.9 780,098 - +0.2 780,114 + +1.0 780,116 + +2.5 780,122 - +0.1 780,124 - -0.3 780,132 - CCNA_00723 0.12 -0.8 780,141 + CCNA_00723 0.17 -1.2 780,141 + CCNA_00723 0.17 +0.4 780,202 + CCNA_00723 0.48 -1.1 780,233 + CCNA_00723 0.64 +1.6 780,233 + CCNA_00723 0.64 -1.5 780,235 + CCNA_00723 0.65 -1.3 780,241 - CCNA_00723 0.68 -0.0 780,241 - CCNA_00723 0.68 -1.4 780,241 - CCNA_00723 0.68 +0.4 780,286 + -0.5 780,316 - -0.9 780,344 + +0.2 780,391 - CCNA_00724 0.16 -0.5 780,416 + CCNA_00724 0.22 +0.8 780,416 + CCNA_00724 0.22 -1.3 780,416 + CCNA_00724 0.22 -1.2 780,422 - CCNA_00724 0.24 +0.4 780,424 + CCNA_00724 0.24 -0.8 780,424 - CCNA_00724 0.24 +0.1 780,424 - CCNA_00724 0.24 +0.7 780,434 + CCNA_00724 0.26 -0.9 780,434 + CCNA_00724 0.26 +1.5 780,448 + CCNA_00724 0.30 +2.7 780,456 - CCNA_00724 0.31 -1.2 780,456 - CCNA_00724 0.31 +0.4 780,456 - CCNA_00724 0.31 +2.7 780,456 - CCNA_00724 0.31 +1.1 780,485 + CCNA_00724 0.38 +2.3 780,485 + CCNA_00724 0.38 -0.2 780,519 - CCNA_00724 0.46 +1.1 780,521 + CCNA_00724 0.47 -0.1 780,530 - CCNA_00724 0.49 -0.6 780,534 - CCNA_00724 0.50 +0.4 780,555 + CCNA_00724 0.55 +1.0 780,561 + CCNA_00724 0.56 -0.5 780,561 + CCNA_00724 0.56 +0.4 780,561 + CCNA_00724 0.56 +0.1 780,561 + CCNA_00724 0.56 +0.4 780,561 + CCNA_00724 0.56 -0.3 780,562 + CCNA_00724 0.56 +0.4 780,563 - CCNA_00724 0.56 -0.6 780,569 - CCNA_00724 0.58 -1.2 780,570 - CCNA_00724 0.58 +0.7 780,570 - CCNA_00724 0.58 -0.0 780,575 - CCNA_00724 0.59 -0.5 780,583 + CCNA_00724 0.61 +3.3 780,657 + CCNA_00724 0.78 +2.4 780,670 - CCNA_00724 0.81 +1.1 780,677 - CCNA_00724 0.83 -0.4 780,682 - CCNA_00724 0.84 -0.6 780,703 - CCNA_00724 0.89 +1.1 780,737 + +0.9 780,738 + +1.6 780,743 + +1.2 780,743 + +2.5 780,751 - -1.3 780,751 - +3.7 780,860 + +0.7 780,882 + -0.9 780,948 + -0.7 780,956 - -0.2 780,989 + +2.4 781,079 - CCNA_00725 0.19 -2.7 781,124 + CCNA_00725 0.26 +1.4 781,129 + CCNA_00725 0.27 -2.6 781,129 + CCNA_00725 0.27 -0.5 781,137 - CCNA_00725 0.28 -0.0 781,137 - CCNA_00725 0.28 -0.5 781,137 - CCNA_00725 0.28 -0.2 781,148 - CCNA_00725 0.30 +0.9 781,166 + CCNA_00725 0.33 +0.7 781,174 - CCNA_00725 0.34 +1.7 781,220 - CCNA_00725 0.41 -0.1 781,220 - CCNA_00725 0.41 -0.5 781,225 - CCNA_00725 0.41 +2.4 781,317 - CCNA_00725 0.55 -1.2 781,356 - CCNA_00725 0.61 +0.3 781,394 - CCNA_00725 0.67 -2.0 781,409 - CCNA_00725 0.69 +0.2 781,418 - CCNA_00725 0.71 -0.2 781,450 - CCNA_00725 0.75 -1.4 781,481 - CCNA_00725 0.80 +0.3 781,513 + CCNA_00725 0.85 +1.9 781,613 - -1.3 781,689 - +1.5 781,689 - +1.9 781,717 + +2.1 781,718 - +0.5 781,736 + -0.3 781,762 - +2.2 781,770 - +2.7 781,772 - +2.2 781,783 - +2.2 781,797 + CCNA_00726 0.10 +0.3 781,817 + CCNA_00726 0.12 +0.1 781,817 + CCNA_00726 0.12 +0.3 781,825 - CCNA_00726 0.12 +2.8 781,825 - CCNA_00726 0.12 +2.1 781,825 - CCNA_00726 0.12 +2.9 781,827 + CCNA_00726 0.13 -0.5 781,827 + CCNA_00726 0.13 +0.3 781,835 - CCNA_00726 0.13 +2.4 781,835 - CCNA_00726 0.13 +2.5 781,835 - CCNA_00726 0.13 +1.9 781,848 - CCNA_00726 0.14 +2.4 781,861 + CCNA_00726 0.15 +1.1 781,897 + CCNA_00726 0.18 -0.7 781,910 + CCNA_00726 0.19 -0.2 781,918 - CCNA_00726 0.19 +1.1 781,923 - CCNA_00726 0.20 +2.9 781,934 + CCNA_00726 0.21 +0.1 781,981 - CCNA_00726 0.24 +2.2 782,022 - CCNA_00726 0.27 +0.4 782,036 - CCNA_00726 0.29 +2.5 782,040 - CCNA_00726 0.29 +1.7 782,063 + CCNA_00726 0.31 -1.0 782,070 + CCNA_00726 0.31 +1.2 782,164 - CCNA_00726 0.38 +1.7 782,175 - CCNA_00726 0.39 +1.5 782,175 - CCNA_00726 0.39 +1.7 782,186 - CCNA_00726 0.40 +1.8 782,210 - CCNA_00726 0.42 +1.8 782,234 + CCNA_00726 0.44 +1.1 782,254 - CCNA_00726 0.45 +1.5 782,260 - CCNA_00726 0.46 +0.7 782,265 - CCNA_00726 0.46 +1.3 782,279 - +1.7 782,279 - CCNA_00726 0.47 +1.9 782,349 - CCNA_00726 0.52 +1.5 782,386 - CCNA_00726 0.55 +2.1 782,421 + CCNA_00726 0.58 +0.7 782,429 - CCNA_00726 0.59 +2.8 782,429 - CCNA_00726 0.59 +1.3 782,483 - CCNA_00726 0.63 +1.5 782,490 - CCNA_00726 0.63 +0.3 782,490 - CCNA_00726 0.63 +1.9 782,507 - CCNA_00726 0.65 +1.4 782,507 - CCNA_00726 0.65 +1.7 782,512 - CCNA_00726 0.65 +0.4 782,517 - CCNA_00726 0.65 +1.3 782,525 + CCNA_00726 0.66 +0.7
Or see this region's nucleotide sequence