Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00524 and CCNA_00525 overlap by 14 nucleotides CCNA_00525 and CCNA_00526 are separated by 114 nucleotides CCNA_00526 and CCNA_00527 are separated by 130 nucleotides
CCNA_00524: CCNA_00524 - conserved hypothetical cytosolic protein, at 537,635 to 538,759
_00524
CCNA_00525: CCNA_00525 - prolipoprotein diacylglyceryl transferase, at 538,746 to 539,654
_00525
CCNA_00526: CCNA_00526 - BMFP membrane fusogenic protein, at 539,769 to 540,026
_00526
CCNA_00527: CCNA_00527 - hypothetical protein, at 540,157 to 540,663
_00527
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 538.761 kb on - strand at 538.761 kb on - strand at 538.763 kb on + strand at 538.787 kb on + strand at 539.352 kb on - strand, within CCNA_00525 at 539.505 kb on - strand, within CCNA_00525 at 539.656 kb on + strand at 539.676 kb on - strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.678 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.688 kb on + strand at 539.690 kb on + strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.696 kb on - strand at 539.697 kb on + strand at 539.709 kb on + strand at 539.714 kb on + strand at 539.766 kb on + strand at 539.904 kb on - strand, within CCNA_00526 at 540.045 kb on - strand at 540.066 kb on - strand at 540.082 kb on + strand at 540.090 kb on - strand at 540.091 kb on + strand at 540.091 kb on + strand at 540.091 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.124 kb on - strand at 540.124 kb on - strand at 540.124 kb on - strand at 540.143 kb on + strand at 540.179 kb on + strand at 540.186 kb on + strand at 540.203 kb on + strand at 540.203 kb on + strand at 540.203 kb on + strand at 540.245 kb on + strand, within CCNA_00527 at 540.253 kb on - strand, within CCNA_00527 at 540.253 kb on - strand, within CCNA_00527 at 540.263 kb on - strand, within CCNA_00527 at 540.268 kb on + strand, within CCNA_00527 at 540.335 kb on - strand, within CCNA_00527 at 540.343 kb on + strand, within CCNA_00527 at 540.346 kb on + strand, within CCNA_00527 at 540.349 kb on - strand, within CCNA_00527 at 540.349 kb on - strand, within CCNA_00527 at 540.363 kb on + strand, within CCNA_00527 at 540.398 kb on + strand, within CCNA_00527 at 540.406 kb on + strand, within CCNA_00527 at 540.406 kb on - strand, within CCNA_00527 at 540.450 kb on + strand, within CCNA_00527 at 540.467 kb on + strand, within CCNA_00527 at 540.486 kb on + strand, within CCNA_00527 at 540.487 kb on + strand, within CCNA_00527 at 540.488 kb on + strand, within CCNA_00527 at 540.488 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.511 kb on + strand, within CCNA_00527 at 540.519 kb on - strand, within CCNA_00527 at 540.522 kb on + strand, within CCNA_00527 at 540.530 kb on - strand, within CCNA_00527 at 540.588 kb on - strand, within CCNA_00527 at 540.609 kb on - strand, within CCNA_00527
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 538,761 - +1.4 538,761 - +0.8 538,763 + -0.1 538,787 + +1.2 539,352 - CCNA_00525 0.67 -2.0 539,505 - CCNA_00525 0.83 +0.5 539,656 + -1.2 539,676 - -2.1 539,678 + -2.9 539,678 + -1.7 539,678 + +0.2 539,678 + +0.9 539,678 + -0.7 539,678 + +1.5 539,678 + +0.2 539,688 + +1.5 539,688 + -1.5 539,688 + -0.1 539,688 + +0.5 539,688 + -0.1 539,688 + +0.9 539,688 + +1.5 539,688 + +0.5 539,688 + +0.9 539,688 + +0.9 539,688 + +0.2 539,688 + +2.5 539,688 + -1.6 539,688 + -1.2 539,688 + +0.2 539,688 + -0.1 539,688 + -1.1 539,688 + +2.5 539,688 + -0.3 539,688 + -1.9 539,690 + -0.2 539,696 - +0.5 539,696 - +0.5 539,696 - +0.5 539,696 - +0.9 539,696 - +0.2 539,696 - -1.1 539,696 - -0.3 539,696 - -0.8 539,696 - -0.8 539,696 - -1.5 539,696 - +0.2 539,696 - -0.6 539,696 - +2.5 539,696 - +1.9 539,696 - +0.5 539,696 - -1.0 539,696 - -0.5 539,696 - -0.6 539,696 - +1.2 539,696 - -2.2 539,696 - -2.8 539,696 - -1.7 539,696 - -0.8 539,696 - +0.2 539,696 - -1.0 539,696 - +0.2 539,696 - +0.5 539,696 - +1.5 539,696 - -1.7 539,696 - +0.2 539,696 - +0.2 539,696 - +1.5 539,696 - -1.1 539,696 - -0.1 539,696 - +0.3 539,696 - +1.2 539,696 - +1.5 539,696 - -1.7 539,696 - -0.9 539,697 + +1.5 539,709 + -1.4 539,714 + -0.7 539,766 + +1.0 539,904 - CCNA_00526 0.52 +1.5 540,045 - -1.6 540,066 - -2.0 540,082 + +1.1 540,090 - -0.1 540,091 + +1.8 540,091 + +2.2 540,091 + +2.8 540,116 + +0.4 540,116 + +1.8 540,116 + +2.4 540,116 + +2.1 540,124 - +0.2 540,124 - -1.2 540,124 - -0.2 540,143 + +1.5 540,179 + +2.3 540,186 + +1.8 540,203 + +2.7 540,203 + +1.6 540,203 + +3.1 540,245 + CCNA_00527 0.17 +2.4 540,253 - CCNA_00527 0.19 +0.0 540,253 - CCNA_00527 0.19 -2.4 540,263 - CCNA_00527 0.21 -1.6 540,268 + CCNA_00527 0.22 +2.1 540,335 - CCNA_00527 0.35 -0.1 540,343 + CCNA_00527 0.37 +2.6 540,346 + CCNA_00527 0.37 +2.5 540,349 - CCNA_00527 0.38 +0.9 540,349 - CCNA_00527 0.38 -0.1 540,363 + CCNA_00527 0.41 +1.9 540,398 + CCNA_00527 0.48 +2.9 540,406 + CCNA_00527 0.49 +2.3 540,406 - CCNA_00527 0.49 -0.1 540,450 + CCNA_00527 0.58 +2.3 540,467 + CCNA_00527 0.61 +2.5 540,486 + CCNA_00527 0.65 +2.5 540,487 + CCNA_00527 0.65 +2.9 540,488 + CCNA_00527 0.65 +2.5 540,488 + CCNA_00527 0.65 +2.6 540,498 + CCNA_00527 0.67 +2.8 540,498 + CCNA_00527 0.67 +2.6 540,498 + CCNA_00527 0.67 +2.8 540,498 + CCNA_00527 0.67 +2.1 540,498 + CCNA_00527 0.67 +2.9 540,511 + CCNA_00527 0.70 +2.6 540,519 - CCNA_00527 0.71 -0.8 540,522 + CCNA_00527 0.72 +2.6 540,530 - CCNA_00527 0.74 +0.2 540,588 - CCNA_00527 0.85 -0.2 540,609 - CCNA_00527 0.89 +2.5
Or see this region's nucleotide sequence