Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00425

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00424 and CCNA_00425 are separated by 72 nucleotidesCCNA_00425 and CCNA_00426 are separated by 450 nucleotidesCCNA_00426 and CCNA_00427 are separated by 68 nucleotides CCNA_00424: CCNA_00424 - aldehyde dehydrogenase, at 434,121 to 435,560 _00424 CCNA_00425: CCNA_00425 - hypothetical protein, at 435,633 to 436,094 _00425 CCNA_00426: CCNA_00426 - very-short-patch-repair endonuclease, at 436,545 to 436,889 _00426 CCNA_00427: CCNA_00427 - hypothetical protein, at 436,958 to 437,146 _00427 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 434.691 kb on - strandat 434.713 kb on - strand, within CCNA_00424at 434.714 kb on + strand, within CCNA_00424at 434.722 kb on - strand, within CCNA_00424at 434.795 kb on - strand, within CCNA_00424at 434.803 kb on + strand, within CCNA_00424at 434.814 kb on + strand, within CCNA_00424at 434.847 kb on + strand, within CCNA_00424at 434.848 kb on + strand, within CCNA_00424at 434.848 kb on + strand, within CCNA_00424at 434.853 kb on + strand, within CCNA_00424at 434.856 kb on - strand, within CCNA_00424at 434.870 kb on + strand, within CCNA_00424at 434.871 kb on + strand, within CCNA_00424at 434.878 kb on - strand, within CCNA_00424at 434.932 kb on - strand, within CCNA_00424at 434.941 kb on + strand, within CCNA_00424at 434.941 kb on + strand, within CCNA_00424at 434.946 kb on + strand, within CCNA_00424at 434.949 kb on - strand, within CCNA_00424at 434.954 kb on - strand, within CCNA_00424at 434.959 kb on - strand, within CCNA_00424at 434.974 kb on + strand, within CCNA_00424at 434.978 kb on + strand, within CCNA_00424at 434.986 kb on - strand, within CCNA_00424at 434.986 kb on - strand, within CCNA_00424at 435.022 kb on - strand, within CCNA_00424at 435.091 kb on - strand, within CCNA_00424at 435.098 kb on - strand, within CCNA_00424at 435.104 kb on + strand, within CCNA_00424at 435.125 kb on + strand, within CCNA_00424at 435.127 kb on + strand, within CCNA_00424at 435.139 kb on + strand, within CCNA_00424at 435.147 kb on - strand, within CCNA_00424at 435.152 kb on - strand, within CCNA_00424at 435.157 kb on - strand, within CCNA_00424at 435.157 kb on - strand, within CCNA_00424at 435.170 kb on + strand, within CCNA_00424at 435.185 kb on - strand, within CCNA_00424at 435.185 kb on - strand, within CCNA_00424at 435.185 kb on - strand, within CCNA_00424at 435.188 kb on + strand, within CCNA_00424at 435.188 kb on + strand, within CCNA_00424at 435.196 kb on + strand, within CCNA_00424at 435.196 kb on + strand, within CCNA_00424at 435.276 kb on + strand, within CCNA_00424at 435.276 kb on + strand, within CCNA_00424at 435.276 kb on + strand, within CCNA_00424at 435.276 kb on + strand, within CCNA_00424at 435.294 kb on - strand, within CCNA_00424at 435.327 kb on + strand, within CCNA_00424at 435.328 kb on - strand, within CCNA_00424at 435.336 kb on - strand, within CCNA_00424at 435.341 kb on + strand, within CCNA_00424at 435.360 kb on + strand, within CCNA_00424at 435.372 kb on + strand, within CCNA_00424at 435.372 kb on + strand, within CCNA_00424at 435.382 kb on - strand, within CCNA_00424at 435.410 kb on - strand, within CCNA_00424at 435.435 kb on - strandat 435.555 kb on + strandat 435.584 kb on + strandat 435.592 kb on - strandat 435.594 kb on + strandat 435.594 kb on + strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.637 kb on - strandat 435.668 kb on - strandat 435.912 kb on + strand, within CCNA_00425at 435.912 kb on + strand, within CCNA_00425at 435.912 kb on + strand, within CCNA_00425at 435.920 kb on - strand, within CCNA_00425at 435.982 kb on + strand, within CCNA_00425at 436.035 kb on + strand, within CCNA_00425at 436.104 kb on + strandat 436.141 kb on + strandat 436.142 kb on - strandat 436.151 kb on + strandat 436.174 kb on - strandat 436.174 kb on - strandat 436.179 kb on - strandat 436.179 kb on - strandat 436.181 kb on + strandat 436.186 kb on + strandat 436.189 kb on - strandat 436.194 kb on - strandat 436.230 kb on + strandat 436.238 kb on - strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.248 kb on - strandat 436.280 kb on + strandat 436.326 kb on + strandat 436.334 kb on - strandat 436.334 kb on - strandat 436.346 kb on - strandat 436.351 kb on + strandat 436.359 kb on - strandat 436.359 kb on - strandat 436.401 kb on + strandat 436.423 kb on + strandat 436.464 kb on + strandat 436.465 kb on - strandat 436.466 kb on - strandat 436.472 kb on - strandat 436.472 kb on - strandat 436.549 kb on - strandat 436.564 kb on + strandat 436.572 kb on - strandat 436.586 kb on + strand, within CCNA_00426at 436.589 kb on - strand, within CCNA_00426at 436.596 kb on - strand, within CCNA_00426at 436.616 kb on + strand, within CCNA_00426at 436.624 kb on - strand, within CCNA_00426at 436.638 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.721 kb on + strand, within CCNA_00426at 436.739 kb on - strand, within CCNA_00426at 436.784 kb on - strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.820 kb on + strand, within CCNA_00426at 436.821 kb on + strand, within CCNA_00426at 436.848 kb on - strand, within CCNA_00426at 436.884 kb on + strandat 436.918 kb on + strandat 436.920 kb on + strandat 436.926 kb on - strandat 436.943 kb on + strandat 436.950 kb on - strandat 436.999 kb on + strand, within CCNA_00427at 436.999 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.066 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.082 kb on + strand, within CCNA_00427

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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434,691 - +2.2
434,713 - CCNA_00424 0.41 +2.2
434,714 + CCNA_00424 0.41 +0.3
434,722 - CCNA_00424 0.42 +1.2
434,795 - CCNA_00424 0.47 -0.1
434,803 + CCNA_00424 0.47 +0.0
434,814 + CCNA_00424 0.48 -0.3
434,847 + CCNA_00424 0.50 -1.4
434,848 + CCNA_00424 0.50 +1.4
434,848 + CCNA_00424 0.50 +1.0
434,853 + CCNA_00424 0.51 +0.7
434,856 - CCNA_00424 0.51 -1.0
434,870 + CCNA_00424 0.52 -0.4
434,871 + CCNA_00424 0.52 +0.7
434,878 - CCNA_00424 0.53 +2.2
434,932 - CCNA_00424 0.56 -0.6
434,941 + CCNA_00424 0.57 -0.1
434,941 + CCNA_00424 0.57 +3.8
434,946 + CCNA_00424 0.57 +0.3
434,949 - CCNA_00424 0.57 +0.7
434,954 - CCNA_00424 0.58 -1.0
434,959 - CCNA_00424 0.58 +1.2
434,974 + CCNA_00424 0.59 -0.2
434,978 + CCNA_00424 0.60 +0.4
434,986 - CCNA_00424 0.60 -1.1
434,986 - CCNA_00424 0.60 +1.2
435,022 - CCNA_00424 0.63 -1.0
435,091 - CCNA_00424 0.67 +0.6
435,098 - CCNA_00424 0.68 -1.0
435,104 + CCNA_00424 0.68 +0.6
435,125 + CCNA_00424 0.70 +0.4
435,127 + CCNA_00424 0.70 +1.1
435,139 + CCNA_00424 0.71 +0.2
435,147 - CCNA_00424 0.71 +0.6
435,152 - CCNA_00424 0.72 -0.1
435,157 - CCNA_00424 0.72 -2.3
435,157 - CCNA_00424 0.72 +1.2
435,170 + CCNA_00424 0.73 -0.1
435,185 - CCNA_00424 0.74 +1.2
435,185 - CCNA_00424 0.74 +0.2
435,185 - CCNA_00424 0.74 +0.3
435,188 + CCNA_00424 0.74 +2.2
435,188 + CCNA_00424 0.74 +2.3
435,196 + CCNA_00424 0.75 +0.5
435,196 + CCNA_00424 0.75 +0.5
435,276 + CCNA_00424 0.80 +0.5
435,276 + CCNA_00424 0.80 +0.9
435,276 + CCNA_00424 0.80 +0.9
435,276 + CCNA_00424 0.80 +1.7
435,294 - CCNA_00424 0.81 +1.2
435,327 + CCNA_00424 0.84 +1.2
435,328 - CCNA_00424 0.84 -0.4
435,336 - CCNA_00424 0.84 -0.8
435,341 + CCNA_00424 0.85 +1.7
435,360 + CCNA_00424 0.86 +1.5
435,372 + CCNA_00424 0.87 +0.9
435,372 + CCNA_00424 0.87 +1.2
435,382 - CCNA_00424 0.88 -0.6
435,410 - CCNA_00424 0.90 +2.2
435,435 - -0.0
435,555 + +0.0
435,584 + +1.1
435,592 - -0.3
435,594 + +1.0
435,594 + +1.5
435,602 - +0.6
435,602 - +2.2
435,602 - -0.7
435,602 - +1.2
435,637 - +1.2
435,668 - -0.4
435,912 + CCNA_00425 0.60 +0.5
435,912 + CCNA_00425 0.60 -0.1
435,912 + CCNA_00425 0.60 -2.3
435,920 - CCNA_00425 0.62 +0.2
435,982 + CCNA_00425 0.76 -1.7
436,035 + CCNA_00425 0.87 -1.1
436,104 + +1.2
436,141 + -0.6
436,142 - -0.8
436,151 + +0.9
436,174 - -1.9
436,174 - -0.9
436,179 - +0.5
436,179 - +0.7
436,181 + -0.1
436,186 + +0.0
436,189 - +0.4
436,194 - +0.6
436,230 + +0.4
436,238 - -1.1
436,240 + +1.0
436,240 + +0.2
436,240 + -0.5
436,240 + -0.6
436,248 - -0.9
436,280 + -1.2
436,326 + +0.0
436,334 - +0.9
436,334 - +1.8
436,346 - -1.0
436,351 + -0.6
436,359 - -0.6
436,359 - -1.3
436,401 + -0.8
436,423 + +0.9
436,464 + +0.2
436,465 - +0.8
436,466 - +0.8
436,472 - -1.5
436,472 - -1.1
436,549 - -0.6
436,564 + -0.5
436,572 - -2.1
436,586 + CCNA_00426 0.12 +0.8
436,589 - CCNA_00426 0.13 -2.1
436,596 - CCNA_00426 0.15 -0.6
436,616 + CCNA_00426 0.21 -2.7
436,624 - CCNA_00426 0.23 +0.2
436,638 - CCNA_00426 0.27 -0.1
436,647 - CCNA_00426 0.30 -0.6
436,647 - CCNA_00426 0.30 -1.0
436,648 - CCNA_00426 0.30 -0.8
436,648 - CCNA_00426 0.30 +3.8
436,721 + CCNA_00426 0.51 -2.3
436,739 - CCNA_00426 0.56 -2.5
436,784 - CCNA_00426 0.69 -2.0
436,797 + CCNA_00426 0.73 +0.1
436,805 - CCNA_00426 0.75 -1.1
436,805 - CCNA_00426 0.75 -0.1
436,805 - CCNA_00426 0.75 +1.2
436,805 - CCNA_00426 0.75 -1.4
436,820 + CCNA_00426 0.80 -0.0
436,821 + CCNA_00426 0.80 +2.2
436,848 - CCNA_00426 0.88 +0.9
436,884 + +0.4
436,918 + +1.2
436,920 + -1.1
436,926 - +1.2
436,943 + -0.1
436,950 - -0.4
436,999 + CCNA_00427 0.22 -0.8
436,999 + CCNA_00427 0.22 +0.2
437,059 + CCNA_00427 0.53 +1.2
437,059 + CCNA_00427 0.53 +2.4
437,059 + CCNA_00427 0.53 +1.0
437,059 + CCNA_00427 0.53 +1.3
437,059 + CCNA_00427 0.53 -1.8
437,066 - CCNA_00427 0.57 +0.2
437,067 - CCNA_00427 0.58 -1.3
437,067 - CCNA_00427 0.58 +1.2
437,067 - CCNA_00427 0.58 -0.4
437,067 - CCNA_00427 0.58 +0.0
437,082 + CCNA_00427 0.66 -0.1

Or see this region's nucleotide sequence