Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00335

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00333 and CCNA_00334 are separated by 62 nucleotidesCCNA_00334 and CCNA_00335 are separated by 37 nucleotidesCCNA_00335 and CCNA_00336 are separated by 10 nucleotides CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957 _00333 CCNA_00334: CCNA_00334 - hypothetical protein, at 345,020 to 345,580 _00334 CCNA_00335: CCNA_00335 - putative secreted protein, at 345,618 to 346,055 _00335 CCNA_00336: CCNA_00336 - lignostilbene-alpha,beta-dioxygenase, at 346,066 to 347,517 _00336 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 344.627 kb on - strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.633 kb on - strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.658 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.674 kb on + strand, within CCNA_00333at 344.708 kb on - strand, within CCNA_00333at 344.738 kb on + strand, within CCNA_00333at 344.746 kb on + strand, within CCNA_00333at 344.746 kb on - strand, within CCNA_00333at 344.791 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.955 kb on - strandat 344.955 kb on - strandat 344.967 kb on - strandat 344.968 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.069 kb on - strandat 345.081 kb on - strand, within CCNA_00334at 345.081 kb on - strandat 345.186 kb on + strand, within CCNA_00334at 345.202 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.231 kb on - strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.245 kb on + strand, within CCNA_00334at 345.253 kb on - strand, within CCNA_00334at 345.254 kb on + strand, within CCNA_00334at 345.260 kb on - strand, within CCNA_00334at 345.267 kb on + strand, within CCNA_00334at 345.280 kb on - strand, within CCNA_00334at 345.292 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.300 kb on - strand, within CCNA_00334at 345.302 kb on - strand, within CCNA_00334at 345.307 kb on - strand, within CCNA_00334at 345.312 kb on - strand, within CCNA_00334at 345.317 kb on + strand, within CCNA_00334at 345.334 kb on + strand, within CCNA_00334at 345.364 kb on + strand, within CCNA_00334at 345.370 kb on - strand, within CCNA_00334at 345.396 kb on + strand, within CCNA_00334at 345.416 kb on + strand, within CCNA_00334at 345.446 kb on + strand, within CCNA_00334at 345.454 kb on - strand, within CCNA_00334at 345.469 kb on + strand, within CCNA_00334at 345.477 kb on - strand, within CCNA_00334at 345.481 kb on + strand, within CCNA_00334at 345.487 kb on + strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.517 kb on + strand, within CCNA_00334at 345.530 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.564 kb on - strandat 345.569 kb on + strandat 345.577 kb on - strandat 345.577 kb on - strandat 345.580 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.588 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.624 kb on - strandat 345.639 kb on + strandat 345.648 kb on - strandat 345.648 kb on - strandat 345.708 kb on + strand, within CCNA_00335at 345.715 kb on - strand, within CCNA_00335at 345.716 kb on - strand, within CCNA_00335at 345.718 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.731 kb on + strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.744 kb on - strand, within CCNA_00335at 345.759 kb on + strand, within CCNA_00335at 345.776 kb on + strand, within CCNA_00335at 345.778 kb on + strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.814 kb on - strand, within CCNA_00335at 345.820 kb on - strand, within CCNA_00335at 345.855 kb on - strand, within CCNA_00335at 345.866 kb on + strand, within CCNA_00335at 345.874 kb on - strand, within CCNA_00335at 345.876 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335at 346.039 kb on + strandat 346.040 kb on - strandat 346.063 kb on + strandat 346.063 kb on + strandat 346.064 kb on + strandat 346.071 kb on - strandat 346.096 kb on + strandat 346.096 kb on + strandat 346.096 kb on + strandat 346.099 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.134 kb on + strandat 346.142 kb on - strandat 346.195 kb on + strandat 346.245 kb on - strand, within CCNA_00336at 346.254 kb on + strand, within CCNA_00336at 346.254 kb on + strand, within CCNA_00336at 346.302 kb on - strand, within CCNA_00336at 346.327 kb on + strand, within CCNA_00336at 346.364 kb on - strand, within CCNA_00336at 346.393 kb on - strand, within CCNA_00336at 346.401 kb on + strand, within CCNA_00336at 346.427 kb on + strand, within CCNA_00336at 346.435 kb on - strand, within CCNA_00336at 346.453 kb on - strand, within CCNA_00336at 346.453 kb on - strand, within CCNA_00336at 346.460 kb on - strand, within CCNA_00336at 346.462 kb on + strand, within CCNA_00336at 346.470 kb on - strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.544 kb on - strand, within CCNA_00336at 346.589 kb on + strand, within CCNA_00336at 346.597 kb on - strand, within CCNA_00336at 346.597 kb on - strand, within CCNA_00336at 346.597 kb on - strand, within CCNA_00336at 346.611 kb on + strand, within CCNA_00336at 346.611 kb on + strand, within CCNA_00336at 346.612 kb on - strand, within CCNA_00336at 346.612 kb on - strand, within CCNA_00336at 346.619 kb on - strand, within CCNA_00336at 346.691 kb on + strand, within CCNA_00336at 346.698 kb on + strand, within CCNA_00336at 346.706 kb on - strand, within CCNA_00336at 346.707 kb on - strand, within CCNA_00336at 346.718 kb on + strand, within CCNA_00336at 346.721 kb on - strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.733 kb on + strand, within CCNA_00336at 346.735 kb on + strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.742 kb on - strand, within CCNA_00336at 346.743 kb on - strand, within CCNA_00336at 346.749 kb on - strand, within CCNA_00336at 346.753 kb on - strand, within CCNA_00336at 346.753 kb on - strand, within CCNA_00336at 346.776 kb on - strand, within CCNA_00336at 346.796 kb on + strand, within CCNA_00336at 346.796 kb on + strand, within CCNA_00336at 346.800 kb on + strand, within CCNA_00336at 346.804 kb on - strand, within CCNA_00336at 346.810 kb on + strand, within CCNA_00336at 346.815 kb on + strand, within CCNA_00336at 346.818 kb on - strand, within CCNA_00336at 346.818 kb on - strand, within CCNA_00336at 346.823 kb on - strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.840 kb on - strand, within CCNA_00336at 346.868 kb on + strand, within CCNA_00336at 346.880 kb on + strand, within CCNA_00336at 346.978 kb on - strand, within CCNA_00336at 346.982 kb on - strand, within CCNA_00336

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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344,627 - CCNA_00333 0.60 +0.5
344,627 - CCNA_00333 0.60 -0.1
344,633 - CCNA_00333 0.61 +0.1
344,650 + CCNA_00333 0.63 -1.7
344,650 + CCNA_00333 0.63 -0.2
344,656 + CCNA_00333 0.64 -1.0
344,656 + CCNA_00333 0.64 +0.6
344,658 - CCNA_00333 0.64 -0.1
344,664 - CCNA_00333 0.64 +2.9
344,664 - CCNA_00333 0.64 +0.7
344,664 - CCNA_00333 0.64 +0.6
344,674 + CCNA_00333 0.66 -2.1
344,708 - CCNA_00333 0.70 -0.8
344,738 + CCNA_00333 0.73 -0.6
344,746 + CCNA_00333 0.74 +1.2
344,746 - CCNA_00333 0.74 -0.6
344,791 + CCNA_00333 0.80 -1.6
344,838 + CCNA_00333 0.86 +0.3
344,838 + CCNA_00333 0.86 +1.2
344,838 + CCNA_00333 0.86 -0.4
344,859 + CCNA_00333 0.88 -0.8
344,859 + CCNA_00333 0.88 -1.0
344,955 - -0.7
344,955 - -0.3
344,967 - -0.4
344,968 - +0.1
345,010 - +0.3
345,010 - +1.6
345,010 - -0.6
345,069 - -1.0
345,081 - CCNA_00334 0.11 -0.4
345,081 - +0.2
345,186 + CCNA_00334 0.30 -0.1
345,202 + CCNA_00334 0.32 +0.6
345,223 + CCNA_00334 0.36 +0.4
345,223 + CCNA_00334 0.36 +1.4
345,231 - CCNA_00334 0.38 -0.6
345,240 + CCNA_00334 0.39 +0.9
345,240 + CCNA_00334 0.39 +0.6
345,245 + CCNA_00334 0.40 -0.8
345,253 - CCNA_00334 0.42 -0.7
345,254 + CCNA_00334 0.42 +3.8
345,260 - CCNA_00334 0.43 -0.8
345,267 + CCNA_00334 0.44 -0.6
345,280 - CCNA_00334 0.46 +0.2
345,292 + CCNA_00334 0.48 +1.2
345,299 + CCNA_00334 0.50 +0.7
345,299 + CCNA_00334 0.50 +0.6
345,299 + CCNA_00334 0.50 +0.2
345,300 - CCNA_00334 0.50 -1.1
345,302 - CCNA_00334 0.50 +0.6
345,307 - CCNA_00334 0.51 +0.6
345,312 - CCNA_00334 0.52 -0.3
345,317 + CCNA_00334 0.53 +0.6
345,334 + CCNA_00334 0.56 +0.4
345,364 + CCNA_00334 0.61 -0.1
345,370 - CCNA_00334 0.62 -0.6
345,396 + CCNA_00334 0.67 +0.6
345,416 + CCNA_00334 0.71 +0.3
345,446 + CCNA_00334 0.76 -1.0
345,454 - CCNA_00334 0.77 -0.3
345,469 + CCNA_00334 0.80 -0.8
345,477 - CCNA_00334 0.81 -1.1
345,481 + CCNA_00334 0.82 -0.8
345,487 + CCNA_00334 0.83 -0.1
345,496 - CCNA_00334 0.85 +0.6
345,496 - CCNA_00334 0.85 +0.2
345,496 - CCNA_00334 0.85 +1.2
345,496 - CCNA_00334 0.85 +0.6
345,496 - CCNA_00334 0.85 -0.1
345,517 + CCNA_00334 0.89 +1.6
345,530 + -1.1
345,556 + -0.1
345,556 + +2.2
345,556 + -1.1
345,556 + -0.8
345,564 - -0.2
345,569 + -0.7
345,577 - -1.7
345,577 - +2.2
345,580 + +0.4
345,581 + -0.4
345,581 + +0.1
345,581 + +0.9
345,588 - -1.0
345,589 - -0.6
345,589 - -0.8
345,589 - -1.1
345,624 - -0.2
345,639 + -0.8
345,648 - -0.1
345,648 - -0.4
345,708 + CCNA_00335 0.21 -1.3
345,715 - CCNA_00335 0.22 -1.1
345,716 - CCNA_00335 0.22 -1.3
345,718 + CCNA_00335 0.23 +0.2
345,725 + CCNA_00335 0.24 -0.4
345,725 + CCNA_00335 0.24 +1.2
345,731 + CCNA_00335 0.26 -1.0
345,733 - CCNA_00335 0.26 +0.6
345,733 - CCNA_00335 0.26 -0.1
345,733 - CCNA_00335 0.26 +2.2
345,744 - CCNA_00335 0.29 -0.8
345,759 + CCNA_00335 0.32 -1.9
345,776 + CCNA_00335 0.36 -1.7
345,778 + CCNA_00335 0.37 -1.8
345,784 - CCNA_00335 0.38 -0.4
345,784 - CCNA_00335 0.38 -0.1
345,814 - CCNA_00335 0.45 -1.9
345,820 - CCNA_00335 0.46 +1.2
345,855 - CCNA_00335 0.54 +2.2
345,866 + CCNA_00335 0.57 +0.6
345,874 - CCNA_00335 0.58 -1.6
345,876 + CCNA_00335 0.59 +0.2
345,924 + CCNA_00335 0.70 -0.4
345,924 + CCNA_00335 0.70 +0.2
345,952 - CCNA_00335 0.76 -0.1
345,952 - CCNA_00335 0.76 +1.2
346,039 + +0.0
346,040 - +0.9
346,063 + +1.2
346,063 + +0.2
346,064 + +0.6
346,071 - -0.7
346,096 + -1.4
346,096 + -1.8
346,096 + +0.1
346,099 - +0.9
346,104 - +1.4
346,104 - -2.3
346,104 - -0.6
346,104 - -0.6
346,104 - -2.4
346,134 + -0.1
346,142 - -1.1
346,195 + -3.1
346,245 - CCNA_00336 0.12 -1.8
346,254 + CCNA_00336 0.13 -1.0
346,254 + CCNA_00336 0.13 +1.2
346,302 - CCNA_00336 0.16 -1.6
346,327 + CCNA_00336 0.18 +0.4
346,364 - CCNA_00336 0.21 -0.3
346,393 - CCNA_00336 0.23 -0.8
346,401 + CCNA_00336 0.23 -1.3
346,427 + CCNA_00336 0.25 -2.1
346,435 - CCNA_00336 0.25 -0.8
346,453 - CCNA_00336 0.27 -0.4
346,453 - CCNA_00336 0.27 -1.9
346,460 - CCNA_00336 0.27 +0.2
346,462 + CCNA_00336 0.27 -1.7
346,470 - CCNA_00336 0.28 -0.4
346,524 + CCNA_00336 0.32 +0.2
346,524 + CCNA_00336 0.32 -1.0
346,524 + CCNA_00336 0.32 -1.3
346,524 + CCNA_00336 0.32 -2.0
346,524 + CCNA_00336 0.32 -1.0
346,544 - CCNA_00336 0.33 +0.2
346,589 + CCNA_00336 0.36 +0.6
346,597 - CCNA_00336 0.37 +0.2
346,597 - CCNA_00336 0.37 -1.5
346,597 - CCNA_00336 0.37 +2.2
346,611 + CCNA_00336 0.38 -1.5
346,611 + CCNA_00336 0.38 +0.2
346,612 - CCNA_00336 0.38 +2.2
346,612 - CCNA_00336 0.38 +0.2
346,619 - CCNA_00336 0.38 -0.4
346,691 + CCNA_00336 0.43 +1.2
346,698 + CCNA_00336 0.44 -0.1
346,706 - CCNA_00336 0.44 -1.7
346,707 - CCNA_00336 0.44 -1.8
346,718 + CCNA_00336 0.45 +0.6
346,721 - CCNA_00336 0.45 -1.1
346,728 + CCNA_00336 0.46 +1.2
346,728 + CCNA_00336 0.46 +0.7
346,728 + CCNA_00336 0.46 +0.2
346,728 + CCNA_00336 0.46 -0.7
346,733 + CCNA_00336 0.46 -0.6
346,735 + CCNA_00336 0.46 -2.4
346,736 - CCNA_00336 0.46 +2.2
346,736 - CCNA_00336 0.46 -0.1
346,742 - CCNA_00336 0.47 -1.8
346,743 - CCNA_00336 0.47 +0.2
346,749 - CCNA_00336 0.47 -1.1
346,753 - CCNA_00336 0.47 -1.5
346,753 - CCNA_00336 0.47 -0.8
346,776 - CCNA_00336 0.49 -0.6
346,796 + CCNA_00336 0.50 -2.5
346,796 + CCNA_00336 0.50 +0.2
346,800 + CCNA_00336 0.51 -1.6
346,804 - CCNA_00336 0.51 +1.2
346,810 + CCNA_00336 0.51 -1.1
346,815 + CCNA_00336 0.52 -0.1
346,818 - CCNA_00336 0.52 -1.3
346,818 - CCNA_00336 0.52 +0.2
346,823 - CCNA_00336 0.52 -0.1
346,831 + CCNA_00336 0.53 -1.1
346,831 + CCNA_00336 0.53 -1.1
346,831 + CCNA_00336 0.53 -0.8
346,839 - CCNA_00336 0.53 -2.3
346,839 - CCNA_00336 0.53 -0.6
346,839 - CCNA_00336 0.53 +0.2
346,840 - CCNA_00336 0.53 -0.5
346,868 + CCNA_00336 0.55 +0.3
346,880 + CCNA_00336 0.56 -0.7
346,978 - CCNA_00336 0.63 +0.6
346,982 - CCNA_00336 0.63 +0.6

Or see this region's nucleotide sequence