Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00310

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00308 and CCNA_00309 are separated by 122 nucleotidesCCNA_00309 and CCNA_00310 are separated by 20 nucleotidesCCNA_00310 and CCNA_00311 overlap by 4 nucleotides CCNA_00308: CCNA_00308 - protein tyrosine phosphatase CtpA, at 323,024 to 323,689 _00308 CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045 _00309 CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845 _00310 CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 323.067 kb on - strandat 323.691 kb on - strandat 323.731 kb on + strandat 323.803 kb on + strandat 323.811 kb on - strandat 323.811 kb on - strandat 324.072 kb on - strandat 324.144 kb on - strand, within CCNA_00310at 324.151 kb on - strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.174 kb on - strand, within CCNA_00310at 324.244 kb on - strand, within CCNA_00310at 324.310 kb on - strand, within CCNA_00310at 324.325 kb on - strand, within CCNA_00310at 324.470 kb on - strand, within CCNA_00310at 324.481 kb on + strand, within CCNA_00310at 324.498 kb on + strand, within CCNA_00310at 324.543 kb on + strand, within CCNA_00310at 324.551 kb on - strand, within CCNA_00310at 324.559 kb on - strand, within CCNA_00310at 324.564 kb on - strand, within CCNA_00310at 324.614 kb on + strand, within CCNA_00310at 324.674 kb on - strand, within CCNA_00310at 324.680 kb on - strand, within CCNA_00310at 324.692 kb on + strand, within CCNA_00310at 324.700 kb on - strand, within CCNA_00310at 324.709 kb on - strand, within CCNA_00310at 324.756 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.799 kb on - strandat 324.800 kb on - strandat 324.806 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.833 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.929 kb on - strandat 324.987 kb on - strand, within CCNA_00311at 325.064 kb on - strand, within CCNA_00311at 325.094 kb on - strand, within CCNA_00311at 325.108 kb on + strand, within CCNA_00311at 325.109 kb on + strand, within CCNA_00311at 325.109 kb on + strand, within CCNA_00311at 325.150 kb on - strand, within CCNA_00311at 325.197 kb on - strand, within CCNA_00311at 325.202 kb on - strand, within CCNA_00311at 325.292 kb on - strand, within CCNA_00311at 325.294 kb on + strand, within CCNA_00311at 325.305 kb on - strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.314 kb on - strand, within CCNA_00311at 325.320 kb on - strand, within CCNA_00311at 325.331 kb on + strand, within CCNA_00311at 325.419 kb on - strand, within CCNA_00311at 325.522 kb on - strand, within CCNA_00311at 325.523 kb on + strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.538 kb on + strand, within CCNA_00311at 325.607 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.615 kb on - strand, within CCNA_00311at 325.654 kb on - strand, within CCNA_00311at 325.671 kb on - strand, within CCNA_00311at 325.695 kb on + strand, within CCNA_00311at 325.758 kb on + strand, within CCNA_00311at 325.765 kb on - strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.807 kb on - strand, within CCNA_00311at 325.829 kb on - strand, within CCNA_00311at 325.838 kb on - strand, within CCNA_00311

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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323,067 - +0.2
323,691 - +0.8
323,731 + +0.4
323,803 + +0.6
323,811 - +1.5
323,811 - +2.0
324,072 - +1.1
324,144 - CCNA_00310 0.10 +0.4
324,151 - CCNA_00310 0.11 -0.2
324,166 + CCNA_00310 0.13 -1.2
324,166 + CCNA_00310 0.13 -1.3
324,174 - CCNA_00310 0.14 +3.8
324,244 - CCNA_00310 0.23 -0.6
324,310 - CCNA_00310 0.31 +0.1
324,325 - CCNA_00310 0.33 -0.7
324,470 - CCNA_00310 0.52 +0.2
324,481 + CCNA_00310 0.53 -0.4
324,498 + CCNA_00310 0.55 +2.2
324,543 + CCNA_00310 0.61 +0.6
324,551 - CCNA_00310 0.62 +0.1
324,559 - CCNA_00310 0.63 +1.2
324,564 - CCNA_00310 0.64 +0.1
324,614 + CCNA_00310 0.70 +1.6
324,674 - CCNA_00310 0.78 +2.2
324,680 - CCNA_00310 0.79 -0.7
324,692 + CCNA_00310 0.80 -0.8
324,700 - CCNA_00310 0.81 +0.9
324,709 - CCNA_00310 0.82 +1.2
324,756 - CCNA_00310 0.88 +1.9
324,760 - CCNA_00310 0.89 +1.4
324,760 - CCNA_00310 0.89 +2.2
324,760 - CCNA_00310 0.89 +0.8
324,760 - CCNA_00310 0.89 +0.9
324,760 - CCNA_00310 0.89 -0.9
324,799 - +1.9
324,800 - +0.3
324,806 + +1.0
324,830 + -0.3
324,830 + -0.1
324,830 + -0.8
324,833 - -0.5
324,838 - -0.2
324,838 - +0.5
324,838 - +1.0
324,929 - +1.3
324,987 - CCNA_00311 0.11 +1.5
325,064 - CCNA_00311 0.17 +1.8
325,094 - CCNA_00311 0.19 +1.2
325,108 + CCNA_00311 0.20 -0.6
325,109 + CCNA_00311 0.20 +3.2
325,109 + CCNA_00311 0.20 +1.2
325,150 - CCNA_00311 0.23 +0.9
325,197 - CCNA_00311 0.27 +1.6
325,202 - CCNA_00311 0.27 +1.7
325,292 - CCNA_00311 0.34 +0.5
325,294 + CCNA_00311 0.34 +2.2
325,305 - CCNA_00311 0.35 +1.1
325,312 + CCNA_00311 0.35 +0.4
325,312 + CCNA_00311 0.35 -0.6
325,314 - CCNA_00311 0.35 +1.1
325,320 - CCNA_00311 0.36 +0.9
325,331 + CCNA_00311 0.37 -0.1
325,419 - CCNA_00311 0.43 +1.0
325,522 - CCNA_00311 0.51 +0.9
325,523 + CCNA_00311 0.51 -0.3
325,531 - CCNA_00311 0.52 +0.8
325,531 - CCNA_00311 0.52 +2.4
325,538 + CCNA_00311 0.52 +0.2
325,607 + CCNA_00311 0.57 +2.9
325,613 + CCNA_00311 0.58 -2.4
325,613 + CCNA_00311 0.58 -0.4
325,615 - CCNA_00311 0.58 +1.7
325,654 - CCNA_00311 0.61 +1.9
325,671 - CCNA_00311 0.62 +0.6
325,695 + CCNA_00311 0.64 +0.6
325,758 + CCNA_00311 0.69 +1.0
325,765 - CCNA_00311 0.69 +2.6
325,766 - CCNA_00311 0.69 +1.3
325,780 - CCNA_00311 0.70 +0.9
325,780 - CCNA_00311 0.70 -0.2
325,807 - CCNA_00311 0.72 +0.2
325,829 - CCNA_00311 0.74 +1.9
325,838 - CCNA_00311 0.75 +3.0

Or see this region's nucleotide sequence