Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00222

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00220 and CCNA_00221 are separated by 6 nucleotidesCCNA_00221 and CCNA_00222 are separated by 104 nucleotidesCCNA_00222 and CCNA_00223 are separated by 8 nucleotidesCCNA_00223 and CCNA_00224 overlap by 4 nucleotides CCNA_00220: CCNA_00220 - thiol-disulfide isomerase and thioredoxin, at 237,030 to 237,635 _00220 CCNA_00221: CCNA_00221 - hypothetical protein, at 237,642 to 238,136 _00221 CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860 _00222 CCNA_00223: CCNA_00223 - esterase lipase Family protein, at 239,869 to 240,651 _00223 CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693 _00224 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 237.244 kb on + strand, within CCNA_00220at 237.244 kb on + strand, within CCNA_00220at 237.244 kb on - strand, within CCNA_00220at 237.248 kb on + strand, within CCNA_00220at 237.281 kb on + strand, within CCNA_00220at 237.344 kb on + strand, within CCNA_00220at 237.347 kb on - strand, within CCNA_00220at 237.365 kb on + strand, within CCNA_00220at 237.371 kb on + strand, within CCNA_00220at 237.371 kb on + strand, within CCNA_00220at 237.378 kb on + strand, within CCNA_00220at 237.379 kb on - strand, within CCNA_00220at 237.379 kb on - strand, within CCNA_00220at 237.406 kb on - strand, within CCNA_00220at 237.419 kb on - strand, within CCNA_00220at 237.422 kb on + strand, within CCNA_00220at 237.424 kb on - strand, within CCNA_00220at 237.424 kb on - strand, within CCNA_00220at 237.424 kb on - strand, within CCNA_00220at 237.430 kb on - strand, within CCNA_00220at 237.430 kb on - strand, within CCNA_00220at 237.430 kb on - strand, within CCNA_00220at 237.458 kb on + strand, within CCNA_00220at 237.466 kb on - strand, within CCNA_00220at 237.470 kb on + strand, within CCNA_00220at 237.518 kb on + strand, within CCNA_00220at 237.552 kb on - strand, within CCNA_00220at 237.559 kb on + strand, within CCNA_00220at 237.608 kb on - strandat 237.608 kb on - strandat 237.615 kb on + strandat 237.620 kb on + strandat 237.628 kb on - strandat 237.628 kb on - strandat 237.628 kb on - strandat 237.639 kb on + strandat 237.647 kb on - strandat 237.667 kb on + strandat 237.667 kb on - strandat 237.672 kb on + strandat 237.674 kb on + strandat 237.674 kb on + strandat 237.675 kb on - strandat 237.680 kb on - strandat 237.680 kb on - strandat 237.682 kb on - strandat 237.713 kb on + strand, within CCNA_00221at 237.713 kb on + strand, within CCNA_00221at 237.713 kb on + strand, within CCNA_00221at 237.713 kb on + strand, within CCNA_00221at 237.715 kb on + strand, within CCNA_00221at 237.715 kb on + strand, within CCNA_00221at 237.721 kb on - strand, within CCNA_00221at 237.739 kb on - strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.774 kb on + strand, within CCNA_00221at 237.781 kb on - strand, within CCNA_00221at 237.794 kb on + strand, within CCNA_00221at 237.794 kb on + strand, within CCNA_00221at 237.799 kb on + strand, within CCNA_00221at 237.802 kb on - strand, within CCNA_00221at 237.815 kb on - strand, within CCNA_00221at 237.815 kb on - strand, within CCNA_00221at 237.891 kb on + strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.934 kb on - strand, within CCNA_00221at 237.936 kb on + strand, within CCNA_00221at 237.936 kb on + strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.967 kb on + strand, within CCNA_00221at 237.968 kb on - strand, within CCNA_00221at 237.976 kb on - strand, within CCNA_00221at 238.081 kb on + strand, within CCNA_00221at 238.081 kb on + strand, within CCNA_00221at 238.081 kb on + strand, within CCNA_00221at 238.081 kb on + strand, within CCNA_00221at 238.096 kb on + strandat 238.096 kb on + strandat 238.096 kb on + strandat 238.096 kb on + strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.197 kb on + strandat 238.245 kb on - strandat 238.258 kb on + strandat 239.814 kb on + strandat 239.878 kb on + strandat 239.929 kb on - strandat 239.955 kb on + strand, within CCNA_00223at 240.014 kb on - strand, within CCNA_00223at 240.028 kb on + strand, within CCNA_00223at 240.036 kb on + strand, within CCNA_00223at 240.036 kb on - strand, within CCNA_00223at 240.042 kb on - strand, within CCNA_00223at 240.050 kb on + strand, within CCNA_00223at 240.058 kb on - strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.069 kb on - strand, within CCNA_00223at 240.074 kb on - strand, within CCNA_00223at 240.082 kb on + strand, within CCNA_00223at 240.105 kb on - strand, within CCNA_00223at 240.152 kb on - strand, within CCNA_00223at 240.152 kb on - strand, within CCNA_00223at 240.162 kb on - strand, within CCNA_00223at 240.223 kb on + strand, within CCNA_00223at 240.269 kb on - strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.328 kb on + strand, within CCNA_00223at 240.397 kb on + strand, within CCNA_00223at 240.404 kb on + strand, within CCNA_00223at 240.430 kb on - strand, within CCNA_00223at 240.460 kb on - strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.498 kb on + strand, within CCNA_00223at 240.503 kb on + strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.516 kb on + strand, within CCNA_00223at 240.524 kb on - strand, within CCNA_00223at 240.524 kb on - strand, within CCNA_00223at 240.531 kb on + strand, within CCNA_00223at 240.547 kb on + strand, within CCNA_00223at 240.555 kb on - strand, within CCNA_00223at 240.674 kb on + strandat 240.674 kb on + strandat 240.674 kb on + strandat 240.682 kb on - strandat 240.682 kb on - strandat 240.702 kb on + strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.741 kb on + strandat 240.749 kb on - strandat 240.749 kb on - strandat 240.762 kb on + strandat 240.791 kb on - strandat 240.815 kb on + strandat 240.822 kb on - strandat 240.822 kb on - strandat 240.834 kb on - strandat 240.840 kb on + strandat 240.848 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
remove
237,244 + CCNA_00220 0.35 +0.4
237,244 + CCNA_00220 0.35 -1.6
237,244 - CCNA_00220 0.35 -2.4
237,248 + CCNA_00220 0.36 -0.4
237,281 + CCNA_00220 0.41 +3.5
237,344 + CCNA_00220 0.52 -0.4
237,347 - CCNA_00220 0.52 -1.0
237,365 + CCNA_00220 0.55 +0.6
237,371 + CCNA_00220 0.56 -0.4
237,371 + CCNA_00220 0.56 -0.1
237,378 + CCNA_00220 0.57 -0.1
237,379 - CCNA_00220 0.58 -0.0
237,379 - CCNA_00220 0.58 -1.3
237,406 - CCNA_00220 0.62 -1.1
237,419 - CCNA_00220 0.64 +0.5
237,422 + CCNA_00220 0.65 -0.4
237,424 - CCNA_00220 0.65 -0.1
237,424 - CCNA_00220 0.65 -0.4
237,424 - CCNA_00220 0.65 -0.8
237,430 - CCNA_00220 0.66 -0.4
237,430 - CCNA_00220 0.66 -2.6
237,430 - CCNA_00220 0.66 -0.1
237,458 + CCNA_00220 0.71 +0.6
237,466 - CCNA_00220 0.72 +0.5
237,470 + CCNA_00220 0.73 +0.6
237,518 + CCNA_00220 0.81 +0.5
237,552 - CCNA_00220 0.86 -0.2
237,559 + CCNA_00220 0.87 +1.2
237,608 - -0.5
237,608 - +0.6
237,615 + +0.4
237,620 + +0.2
237,628 - +0.3
237,628 - -0.4
237,628 - -0.0
237,639 + -0.9
237,647 - -1.3
237,667 + -0.2
237,667 - -0.7
237,672 + +0.4
237,674 + -1.0
237,674 + +0.6
237,675 - +0.2
237,680 - -1.2
237,680 - -0.6
237,682 - -1.0
237,713 + CCNA_00221 0.14 +0.3
237,713 + CCNA_00221 0.14 +0.6
237,713 + CCNA_00221 0.14 -0.7
237,713 + CCNA_00221 0.14 -1.1
237,715 + CCNA_00221 0.15 -0.8
237,715 + CCNA_00221 0.15 +1.5
237,721 - CCNA_00221 0.16 -0.8
237,739 - CCNA_00221 0.20 +1.2
237,773 + CCNA_00221 0.26 -0.6
237,773 + CCNA_00221 0.26 -0.1
237,773 + CCNA_00221 0.26 -0.9
237,774 + CCNA_00221 0.27 -0.6
237,781 - CCNA_00221 0.28 -1.0
237,794 + CCNA_00221 0.31 +0.6
237,794 + CCNA_00221 0.31 -0.3
237,799 + CCNA_00221 0.32 -0.8
237,802 - CCNA_00221 0.32 +0.4
237,815 - CCNA_00221 0.35 -0.4
237,815 - CCNA_00221 0.35 -1.0
237,891 + CCNA_00221 0.50 -0.6
237,931 + CCNA_00221 0.58 +0.4
237,931 + CCNA_00221 0.58 -1.5
237,934 - CCNA_00221 0.59 -0.8
237,936 + CCNA_00221 0.59 -1.0
237,936 + CCNA_00221 0.59 -0.5
237,939 - CCNA_00221 0.60 -2.9
237,939 - CCNA_00221 0.60 +1.8
237,939 - CCNA_00221 0.60 +0.2
237,939 - CCNA_00221 0.60 +1.3
237,944 - CCNA_00221 0.61 -0.4
237,944 - CCNA_00221 0.61 -0.1
237,967 + CCNA_00221 0.66 -2.1
237,968 - CCNA_00221 0.66 -1.7
237,976 - CCNA_00221 0.67 +0.9
238,081 + CCNA_00221 0.89 -1.3
238,081 + CCNA_00221 0.89 -0.3
238,081 + CCNA_00221 0.89 -1.0
238,081 + CCNA_00221 0.89 +1.5
238,096 + -0.4
238,096 + -2.5
238,096 + -1.1
238,096 + -1.3
238,104 - -0.6
238,104 - -1.1
238,104 - -0.3
238,197 + -1.4
238,245 - -1.9
238,258 + -0.6
239,814 + +0.2
239,878 + +0.5
239,929 - -0.4
239,955 + CCNA_00223 0.11 +1.1
240,014 - CCNA_00223 0.19 +0.2
240,028 + CCNA_00223 0.20 +0.3
240,036 + CCNA_00223 0.21 +0.9
240,036 - CCNA_00223 0.21 -2.4
240,042 - CCNA_00223 0.22 -1.1
240,050 + CCNA_00223 0.23 -0.3
240,058 - CCNA_00223 0.24 +1.2
240,061 + CCNA_00223 0.25 +2.1
240,061 + CCNA_00223 0.25 +0.2
240,069 - CCNA_00223 0.26 -0.6
240,074 - CCNA_00223 0.26 -0.4
240,082 + CCNA_00223 0.27 +0.3
240,105 - CCNA_00223 0.30 +0.2
240,152 - CCNA_00223 0.36 -0.5
240,152 - CCNA_00223 0.36 +0.6
240,162 - CCNA_00223 0.37 +2.2
240,223 + CCNA_00223 0.45 +1.1
240,269 - CCNA_00223 0.51 +0.1
240,312 + CCNA_00223 0.57 +4.2
240,312 + CCNA_00223 0.57 -0.1
240,312 + CCNA_00223 0.57 +0.3
240,318 + CCNA_00223 0.57 +0.4
240,320 - CCNA_00223 0.58 -1.4
240,320 - CCNA_00223 0.58 -1.8
240,320 - CCNA_00223 0.58 -1.9
240,320 - CCNA_00223 0.58 +1.2
240,320 - CCNA_00223 0.58 -0.4
240,326 - CCNA_00223 0.58 -0.1
240,328 + CCNA_00223 0.59 +0.3
240,397 + CCNA_00223 0.67 +0.4
240,404 + CCNA_00223 0.68 -3.0
240,430 - CCNA_00223 0.72 -0.4
240,460 - CCNA_00223 0.75 -1.0
240,468 + CCNA_00223 0.77 +0.1
240,468 + CCNA_00223 0.77 -0.2
240,468 + CCNA_00223 0.77 +0.4
240,498 + CCNA_00223 0.80 -0.6
240,503 + CCNA_00223 0.81 +0.6
240,511 - CCNA_00223 0.82 +0.6
240,516 + CCNA_00223 0.83 +0.5
240,524 - CCNA_00223 0.84 +0.2
240,524 - CCNA_00223 0.84 -0.1
240,531 + CCNA_00223 0.85 +2.1
240,547 + CCNA_00223 0.87 +0.2
240,555 - CCNA_00223 0.88 -2.1
240,674 + +1.5
240,674 + -0.8
240,674 + -0.1
240,682 - -0.0
240,682 - +1.1
240,702 + -0.8
240,710 - +0.4
240,710 - +0.2
240,710 - -0.4
240,710 - +0.7
240,710 - +0.7
240,741 + -0.8
240,749 - -1.2
240,749 - +0.9
240,762 + +1.6
240,791 - +0.5
240,815 + +0.6
240,822 - +0.9
240,822 - +1.1
240,834 - +0.2
240,840 + -1.5
240,848 - +0.6

Or see this region's nucleotide sequence