Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00167

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00166 and CCNA_00167 are separated by 240 nucleotidesCCNA_00167 and CCNA_00168 are separated by 84 nucleotides CCNA_00166: CCNA_00166 - putative transglutaminase-like cysteine proteinase, at 178,252 to 179,070 _00166 CCNA_00167: CCNA_00167 - metallophosphatase family protein, at 179,311 to 180,120 _00167 CCNA_00168: CCNA_00168 - polysaccharide export protein, at 180,205 to 180,801 _00168 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 178.317 kb on - strandat 178.320 kb on + strandat 178.337 kb on + strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.402 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.449 kb on + strand, within CCNA_00166at 178.483 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.520 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.545 kb on + strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.597 kb on - strand, within CCNA_00166at 178.610 kb on - strand, within CCNA_00166at 178.646 kb on - strand, within CCNA_00166at 178.649 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.657 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.672 kb on - strand, within CCNA_00166at 178.691 kb on - strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.717 kb on + strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166at 178.757 kb on + strand, within CCNA_00166at 178.816 kb on + strand, within CCNA_00166at 178.817 kb on - strand, within CCNA_00166at 178.828 kb on + strand, within CCNA_00166at 178.833 kb on + strand, within CCNA_00166at 178.833 kb on + strand, within CCNA_00166at 178.836 kb on - strand, within CCNA_00166at 178.841 kb on - strand, within CCNA_00166at 178.845 kb on + strand, within CCNA_00166at 178.874 kb on + strand, within CCNA_00166at 178.874 kb on + strand, within CCNA_00166at 178.875 kb on - strand, within CCNA_00166at 178.875 kb on - strand, within CCNA_00166at 178.882 kb on - strand, within CCNA_00166at 178.882 kb on - strand, within CCNA_00166at 178.913 kb on - strand, within CCNA_00166at 178.914 kb on + strand, within CCNA_00166at 178.914 kb on + strand, within CCNA_00166at 178.920 kb on - strand, within CCNA_00166at 178.922 kb on - strand, within CCNA_00166at 178.953 kb on - strand, within CCNA_00166at 178.962 kb on + strand, within CCNA_00166at 178.962 kb on + strand, within CCNA_00166at 178.970 kb on - strand, within CCNA_00166at 178.970 kb on - strand, within CCNA_00166at 178.987 kb on + strand, within CCNA_00166at 178.991 kb on + strandat 179.003 kb on + strandat 179.009 kb on - strandat 179.012 kb on - strandat 179.025 kb on - strandat 179.030 kb on + strandat 179.038 kb on - strandat 179.038 kb on - strandat 179.049 kb on - strandat 179.145 kb on - strandat 179.249 kb on + strandat 179.249 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.341 kb on + strandat 179.349 kb on - strandat 179.354 kb on - strandat 179.377 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.381 kb on + strandat 179.387 kb on - strandat 179.389 kb on - strandat 179.389 kb on - strandat 179.418 kb on - strand, within CCNA_00167at 179.434 kb on + strand, within CCNA_00167at 179.469 kb on - strand, within CCNA_00167at 179.471 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.561 kb on + strand, within CCNA_00167at 179.587 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.751 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.819 kb on + strand, within CCNA_00167at 179.826 kb on + strand, within CCNA_00167at 179.857 kb on + strand, within CCNA_00167at 179.868 kb on + strand, within CCNA_00167at 179.898 kb on + strand, within CCNA_00167at 179.903 kb on + strand, within CCNA_00167at 179.945 kb on + strand, within CCNA_00167at 179.983 kb on - strand, within CCNA_00167at 180.030 kb on - strand, within CCNA_00167at 180.039 kb on + strand, within CCNA_00167at 180.041 kb on + strandat 180.081 kb on + strandat 180.081 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.143 kb on + strandat 180.290 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.305 kb on + strand, within CCNA_00168at 180.305 kb on + strand, within CCNA_00168at 180.313 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.391 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.510 kb on + strand, within CCNA_00168at 180.513 kb on - strand, within CCNA_00168at 180.516 kb on + strand, within CCNA_00168at 180.518 kb on - strand, within CCNA_00168at 180.576 kb on + strand, within CCNA_00168at 180.595 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.616 kb on + strand, within CCNA_00168at 180.636 kb on - strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.645 kb on - strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.745 kb on + strandat 180.779 kb on + strandat 180.795 kb on + strandat 180.881 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.919 kb on + strandat 180.940 kb on - strandat 180.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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178,317 - +0.8
178,320 + +0.8
178,337 + CCNA_00166 0.10 -2.5
178,346 - CCNA_00166 0.11 +2.4
178,346 - CCNA_00166 0.11 +2.8
178,346 - CCNA_00166 0.11 +2.5
178,389 - CCNA_00166 0.17 +0.7
178,389 - CCNA_00166 0.17 +0.3
178,389 - CCNA_00166 0.17 +1.2
178,389 - CCNA_00166 0.17 +1.1
178,389 - CCNA_00166 0.17 +1.6
178,402 + CCNA_00166 0.18 -0.1
178,424 + CCNA_00166 0.21 -1.1
178,424 + CCNA_00166 0.21 +0.6
178,449 + CCNA_00166 0.24 +0.2
178,483 + CCNA_00166 0.28 +1.2
178,502 + CCNA_00166 0.31 -0.6
178,502 + CCNA_00166 0.31 -1.8
178,510 - CCNA_00166 0.32 +0.2
178,510 - CCNA_00166 0.32 -0.6
178,520 + CCNA_00166 0.33 -0.9
178,535 + CCNA_00166 0.35 -1.0
178,535 + CCNA_00166 0.35 +0.9
178,543 - CCNA_00166 0.36 +0.2
178,543 - CCNA_00166 0.36 -0.7
178,543 - CCNA_00166 0.36 -1.6
178,545 + CCNA_00166 0.36 -0.4
178,548 - CCNA_00166 0.36 -0.2
178,548 - CCNA_00166 0.36 +0.3
178,548 - CCNA_00166 0.36 +0.3
178,597 - CCNA_00166 0.42 +0.5
178,610 - CCNA_00166 0.44 +1.6
178,646 - CCNA_00166 0.48 -0.3
178,649 + CCNA_00166 0.48 +0.8
178,654 + CCNA_00166 0.49 -1.9
178,654 + CCNA_00166 0.49 -1.0
178,654 + CCNA_00166 0.49 -2.1
178,657 - CCNA_00166 0.49 +0.5
178,662 - CCNA_00166 0.50 +0.1
178,662 - CCNA_00166 0.50 -0.5
178,664 + CCNA_00166 0.50 +0.2
178,664 + CCNA_00166 0.50 -3.1
178,664 + CCNA_00166 0.50 +0.2
178,664 + CCNA_00166 0.50 -0.6
178,672 - CCNA_00166 0.51 -1.2
178,691 - CCNA_00166 0.54 +0.8
178,696 + CCNA_00166 0.54 -1.1
178,717 + CCNA_00166 0.57 -1.3
178,725 - CCNA_00166 0.58 -2.1
178,725 - CCNA_00166 0.58 -0.1
178,757 + CCNA_00166 0.62 +0.6
178,816 + CCNA_00166 0.69 +0.3
178,817 - CCNA_00166 0.69 +0.5
178,828 + CCNA_00166 0.70 +0.2
178,833 + CCNA_00166 0.71 -0.5
178,833 + CCNA_00166 0.71 +1.2
178,836 - CCNA_00166 0.71 +0.4
178,841 - CCNA_00166 0.72 +1.6
178,845 + CCNA_00166 0.72 -2.3
178,874 + CCNA_00166 0.76 -0.3
178,874 + CCNA_00166 0.76 -0.8
178,875 - CCNA_00166 0.76 -0.9
178,875 - CCNA_00166 0.76 -0.3
178,882 - CCNA_00166 0.77 -0.6
178,882 - CCNA_00166 0.77 -0.3
178,913 - CCNA_00166 0.81 +0.6
178,914 + CCNA_00166 0.81 -1.7
178,914 + CCNA_00166 0.81 -2.6
178,920 - CCNA_00166 0.82 -2.0
178,922 - CCNA_00166 0.82 -0.8
178,953 - CCNA_00166 0.86 -1.5
178,962 + CCNA_00166 0.87 -1.3
178,962 + CCNA_00166 0.87 +1.0
178,970 - CCNA_00166 0.88 -0.6
178,970 - CCNA_00166 0.88 +0.6
178,987 + CCNA_00166 0.90 +1.3
178,991 + +0.6
179,003 + -0.2
179,009 - -0.1
179,012 - -0.6
179,025 - -0.1
179,030 + +0.6
179,038 - +0.6
179,038 - -1.4
179,049 - -0.0
179,145 - -1.1
179,249 + +0.6
179,249 + -0.7
179,334 + +1.4
179,334 + +0.9
179,334 + +2.9
179,341 + +1.7
179,349 - +2.2
179,354 - +0.0
179,377 + +2.3
179,379 + +1.3
179,379 + +1.7
179,379 + +2.1
179,381 + +1.4
179,387 - -0.8
179,389 - +1.2
179,389 - -0.6
179,418 - CCNA_00167 0.13 +0.6
179,434 + CCNA_00167 0.15 +1.8
179,469 - CCNA_00167 0.20 +0.6
179,471 + CCNA_00167 0.20 +1.9
179,543 + CCNA_00167 0.29 +1.7
179,543 + CCNA_00167 0.29 +2.0
179,543 + CCNA_00167 0.29 +1.6
179,543 + CCNA_00167 0.29 +1.9
179,551 - CCNA_00167 0.30 -1.4
179,561 + CCNA_00167 0.31 +2.2
179,587 + CCNA_00167 0.34 +1.3
179,636 + CCNA_00167 0.40 +2.4
179,636 + CCNA_00167 0.40 +1.6
179,751 + CCNA_00167 0.54 +1.2
179,798 + CCNA_00167 0.60 +2.3
179,798 + CCNA_00167 0.60 +1.8
179,806 - CCNA_00167 0.61 +0.6
179,819 + CCNA_00167 0.63 +2.4
179,826 + CCNA_00167 0.64 +2.4
179,857 + CCNA_00167 0.67 +1.6
179,868 + CCNA_00167 0.69 +2.1
179,898 + CCNA_00167 0.72 +1.8
179,903 + CCNA_00167 0.73 +1.3
179,945 + CCNA_00167 0.78 +2.7
179,983 - CCNA_00167 0.83 -2.1
180,030 - CCNA_00167 0.89 +0.2
180,039 + CCNA_00167 0.90 +2.0
180,041 + +1.8
180,081 + +2.3
180,081 + -0.4
180,115 + +0.0
180,115 + +1.7
180,115 + +1.2
180,123 - +2.2
180,123 - +0.2
180,143 + +1.5
180,290 + CCNA_00168 0.14 +2.4
180,295 + CCNA_00168 0.15 +3.2
180,295 + CCNA_00168 0.15 +3.0
180,305 + CCNA_00168 0.17 +2.6
180,305 + CCNA_00168 0.17 +2.4
180,313 - CCNA_00168 0.18 -0.1
180,360 - CCNA_00168 0.26 -1.3
180,360 - CCNA_00168 0.26 +1.6
180,372 + CCNA_00168 0.28 +2.8
180,391 + CCNA_00168 0.31 +2.6
180,428 + CCNA_00168 0.37 +2.7
180,428 + CCNA_00168 0.37 +2.3
180,433 + CCNA_00168 0.38 +2.5
180,433 + CCNA_00168 0.38 +2.6
180,462 + CCNA_00168 0.43 +2.3
180,462 + CCNA_00168 0.43 +2.7
180,462 + CCNA_00168 0.43 +2.7
180,492 + CCNA_00168 0.48 +2.3
180,492 + CCNA_00168 0.48 +2.6
180,492 + CCNA_00168 0.48 +2.5
180,500 - CCNA_00168 0.49 +1.2
180,505 + CCNA_00168 0.50 +2.6
180,505 + CCNA_00168 0.50 +2.4
180,505 + CCNA_00168 0.50 +2.5
180,510 + CCNA_00168 0.51 +2.7
180,513 - CCNA_00168 0.52 +0.2
180,516 + CCNA_00168 0.52 +2.8
180,518 - CCNA_00168 0.52 +0.6
180,576 + CCNA_00168 0.62 +2.1
180,595 + CCNA_00168 0.65 +2.4
180,603 + CCNA_00168 0.67 +2.6
180,603 + CCNA_00168 0.67 +3.2
180,616 + CCNA_00168 0.69 +2.9
180,636 - CCNA_00168 0.72 -1.2
180,637 + CCNA_00168 0.72 +3.3
180,645 - CCNA_00168 0.74 +0.6
180,726 + CCNA_00168 0.87 +3.4
180,726 + CCNA_00168 0.87 +3.1
180,726 + CCNA_00168 0.87 +3.4
180,734 - CCNA_00168 0.89 -1.1
180,734 - CCNA_00168 0.89 +0.6
180,745 + +3.2
180,779 + +3.1
180,795 + +2.8
180,881 + -0.6
180,887 + -0.4
180,887 + +2.2
180,887 + -0.1
180,895 - +0.2
180,895 - -0.1
180,919 + +1.2
180,940 - +0.2
180,961 - -1.1

Or see this region's nucleotide sequence