Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00105

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00103 and CCNA_00104 are separated by 128 nucleotidesCCNA_00104 and CCNA_00105 are separated by 97 nucleotidesCCNA_00105 and CCNA_00106 are separated by 47 nucleotides CCNA_00103: CCNA_00103 - gamma-glutamyltranspeptidase, at 113,463 to 115,160 _00103 CCNA_00104: CCNA_00104 - orotidine 5'-phosphate decarboxylase, at 115,289 to 115,990 _00104 CCNA_00105: CCNA_00105 - MarC family integral membrane protein, at 116,088 to 116,786 _00105 CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099 _00106 Position (kb) 116 117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.092 kb on + strandat 115.092 kb on + strandat 115.108 kb on - strandat 115.112 kb on + strandat 115.138 kb on + strandat 115.138 kb on + strandat 115.138 kb on + strandat 115.138 kb on + strandat 115.138 kb on + strandat 115.138 kb on + strandat 115.146 kb on - strandat 115.146 kb on - strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.176 kb on + strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.184 kb on - strandat 115.212 kb on - strandat 115.255 kb on - strandat 115.282 kb on + strandat 115.289 kb on - strandat 115.375 kb on - strand, within CCNA_00104at 115.395 kb on + strand, within CCNA_00104at 115.448 kb on - strand, within CCNA_00104at 115.508 kb on + strand, within CCNA_00104at 115.508 kb on + strand, within CCNA_00104at 115.508 kb on + strand, within CCNA_00104at 115.516 kb on - strand, within CCNA_00104at 115.516 kb on - strand, within CCNA_00104at 115.549 kb on - strand, within CCNA_00104at 115.551 kb on + strand, within CCNA_00104at 115.551 kb on + strand, within CCNA_00104at 115.556 kb on + strand, within CCNA_00104at 115.556 kb on + strand, within CCNA_00104at 115.559 kb on - strand, within CCNA_00104at 115.562 kb on + strand, within CCNA_00104at 115.564 kb on - strand, within CCNA_00104at 115.564 kb on - strand, within CCNA_00104at 115.577 kb on + strand, within CCNA_00104at 115.618 kb on - strand, within CCNA_00104at 115.651 kb on - strand, within CCNA_00104at 115.651 kb on - strand, within CCNA_00104at 115.651 kb on - strand, within CCNA_00104at 115.667 kb on - strand, within CCNA_00104at 115.731 kb on + strand, within CCNA_00104at 115.739 kb on - strand, within CCNA_00104at 115.746 kb on - strand, within CCNA_00104at 115.756 kb on + strand, within CCNA_00104at 115.760 kb on + strand, within CCNA_00104at 115.760 kb on + strand, within CCNA_00104at 115.762 kb on - strand, within CCNA_00104at 115.763 kb on - strand, within CCNA_00104at 115.768 kb on - strand, within CCNA_00104at 115.780 kb on - strand, within CCNA_00104at 115.802 kb on - strand, within CCNA_00104at 115.827 kb on + strand, within CCNA_00104at 115.852 kb on + strand, within CCNA_00104at 115.884 kb on - strand, within CCNA_00104at 115.916 kb on - strand, within CCNA_00104at 115.954 kb on + strandat 115.955 kb on - strandat 115.967 kb on + strandat 115.978 kb on + strandat 115.986 kb on - strandat 116.018 kb on + strandat 116.025 kb on - strandat 116.039 kb on + strandat 116.064 kb on - strandat 116.720 kb on + strandat 116.770 kb on - strandat 116.794 kb on + strandat 116.794 kb on + strandat 116.794 kb on + strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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115,092 + -1.7
115,092 + +0.4
115,108 - -0.1
115,112 + -1.4
115,138 + -0.2
115,138 + -0.7
115,138 + +0.8
115,138 + -0.0
115,138 + +1.3
115,138 + +2.0
115,146 - +1.2
115,146 - +0.2
115,176 + +1.2
115,176 + +1.6
115,176 + +1.8
115,176 + +1.6
115,176 + +1.6
115,176 + +1.7
115,176 + +1.3
115,184 - -0.1
115,184 - -0.4
115,184 - +0.2
115,184 - -1.0
115,184 - +0.6
115,184 - -1.5
115,184 - +0.2
115,212 - +0.2
115,255 - +0.5
115,282 + -0.3
115,289 - +0.2
115,375 - CCNA_00104 0.12 +2.1
115,395 + CCNA_00104 0.15 +1.1
115,448 - CCNA_00104 0.23 -0.0
115,508 + CCNA_00104 0.31 -1.0
115,508 + CCNA_00104 0.31 +1.9
115,508 + CCNA_00104 0.31 -0.1
115,516 - CCNA_00104 0.32 +1.2
115,516 - CCNA_00104 0.32 +0.9
115,549 - CCNA_00104 0.37 +1.8
115,551 + CCNA_00104 0.37 +1.2
115,551 + CCNA_00104 0.37 +0.0
115,556 + CCNA_00104 0.38 +0.7
115,556 + CCNA_00104 0.38 +0.2
115,559 - CCNA_00104 0.38 +0.9
115,562 + CCNA_00104 0.39 -0.8
115,564 - CCNA_00104 0.39 +1.7
115,564 - CCNA_00104 0.39 +1.5
115,577 + CCNA_00104 0.41 +0.7
115,618 - CCNA_00104 0.47 +0.8
115,651 - CCNA_00104 0.52 +0.7
115,651 - CCNA_00104 0.52 +1.0
115,651 - CCNA_00104 0.52 +1.9
115,667 - CCNA_00104 0.54 -0.6
115,731 + CCNA_00104 0.63 +1.1
115,739 - CCNA_00104 0.64 +1.2
115,746 - CCNA_00104 0.65 +0.9
115,756 + CCNA_00104 0.67 -0.3
115,760 + CCNA_00104 0.67 -0.1
115,760 + CCNA_00104 0.67 -0.3
115,762 - CCNA_00104 0.67 +1.4
115,763 - CCNA_00104 0.68 +0.9
115,768 - CCNA_00104 0.68 +1.0
115,780 - CCNA_00104 0.70 +0.6
115,802 - CCNA_00104 0.73 +0.9
115,827 + CCNA_00104 0.77 -0.5
115,852 + CCNA_00104 0.80 +0.3
115,884 - CCNA_00104 0.85 +0.6
115,916 - CCNA_00104 0.89 +0.2
115,954 + +0.3
115,955 - +1.6
115,967 + -0.2
115,978 + +0.2
115,986 - +1.4
116,018 + -1.6
116,025 - -1.1
116,039 + -0.4
116,064 - -2.3
116,720 + -1.8
116,770 - +0.2
116,794 + +3.2
116,794 + +0.2
116,794 + +0.6
116,802 - -1.1
116,802 - -1.9
116,802 - -1.3
116,802 - -2.0
116,802 - -1.0
116,802 - +0.1
116,867 + +0.2

Or see this region's nucleotide sequence