Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00103 and CCNA_00104 are separated by 128 nucleotides CCNA_00104 and CCNA_00105 are separated by 97 nucleotides CCNA_00105 and CCNA_00106 are separated by 47 nucleotides
CCNA_00103: CCNA_00103 - gamma-glutamyltranspeptidase, at 113,463 to 115,160
_00103
CCNA_00104: CCNA_00104 - orotidine 5'-phosphate decarboxylase, at 115,289 to 115,990
_00104
CCNA_00105: CCNA_00105 - MarC family integral membrane protein, at 116,088 to 116,786
_00105
CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099
_00106
Position (kb)
116
117 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 115.092 kb on + strand at 115.092 kb on + strand at 115.108 kb on - strand at 115.112 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.146 kb on - strand at 115.146 kb on - strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.212 kb on - strand at 115.255 kb on - strand at 115.282 kb on + strand at 115.289 kb on - strand at 115.375 kb on - strand, within CCNA_00104 at 115.395 kb on + strand, within CCNA_00104 at 115.448 kb on - strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.516 kb on - strand, within CCNA_00104 at 115.516 kb on - strand, within CCNA_00104 at 115.549 kb on - strand, within CCNA_00104 at 115.551 kb on + strand, within CCNA_00104 at 115.551 kb on + strand, within CCNA_00104 at 115.556 kb on + strand, within CCNA_00104 at 115.556 kb on + strand, within CCNA_00104 at 115.559 kb on - strand, within CCNA_00104 at 115.562 kb on + strand, within CCNA_00104 at 115.564 kb on - strand, within CCNA_00104 at 115.564 kb on - strand, within CCNA_00104 at 115.577 kb on + strand, within CCNA_00104 at 115.618 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.667 kb on - strand, within CCNA_00104 at 115.731 kb on + strand, within CCNA_00104 at 115.739 kb on - strand, within CCNA_00104 at 115.746 kb on - strand, within CCNA_00104 at 115.756 kb on + strand, within CCNA_00104 at 115.760 kb on + strand, within CCNA_00104 at 115.760 kb on + strand, within CCNA_00104 at 115.762 kb on - strand, within CCNA_00104 at 115.763 kb on - strand, within CCNA_00104 at 115.768 kb on - strand, within CCNA_00104 at 115.780 kb on - strand, within CCNA_00104 at 115.802 kb on - strand, within CCNA_00104 at 115.827 kb on + strand, within CCNA_00104 at 115.852 kb on + strand, within CCNA_00104 at 115.884 kb on - strand, within CCNA_00104 at 115.916 kb on - strand, within CCNA_00104 at 115.954 kb on + strand at 115.955 kb on - strand at 115.967 kb on + strand at 115.978 kb on + strand at 115.986 kb on - strand at 116.018 kb on + strand at 116.025 kb on - strand at 116.039 kb on + strand at 116.064 kb on - strand at 116.720 kb on + strand at 116.770 kb on - strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 115,092 + -1.7 115,092 + +0.4 115,108 - -0.1 115,112 + -1.4 115,138 + -0.2 115,138 + -0.7 115,138 + +0.8 115,138 + -0.0 115,138 + +1.3 115,138 + +2.0 115,146 - +1.2 115,146 - +0.2 115,176 + +1.2 115,176 + +1.6 115,176 + +1.8 115,176 + +1.6 115,176 + +1.6 115,176 + +1.7 115,176 + +1.3 115,184 - -0.1 115,184 - -0.4 115,184 - +0.2 115,184 - -1.0 115,184 - +0.6 115,184 - -1.5 115,184 - +0.2 115,212 - +0.2 115,255 - +0.5 115,282 + -0.3 115,289 - +0.2 115,375 - CCNA_00104 0.12 +2.1 115,395 + CCNA_00104 0.15 +1.1 115,448 - CCNA_00104 0.23 -0.0 115,508 + CCNA_00104 0.31 -1.0 115,508 + CCNA_00104 0.31 +1.9 115,508 + CCNA_00104 0.31 -0.1 115,516 - CCNA_00104 0.32 +1.2 115,516 - CCNA_00104 0.32 +0.9 115,549 - CCNA_00104 0.37 +1.8 115,551 + CCNA_00104 0.37 +1.2 115,551 + CCNA_00104 0.37 +0.0 115,556 + CCNA_00104 0.38 +0.7 115,556 + CCNA_00104 0.38 +0.2 115,559 - CCNA_00104 0.38 +0.9 115,562 + CCNA_00104 0.39 -0.8 115,564 - CCNA_00104 0.39 +1.7 115,564 - CCNA_00104 0.39 +1.5 115,577 + CCNA_00104 0.41 +0.7 115,618 - CCNA_00104 0.47 +0.8 115,651 - CCNA_00104 0.52 +0.7 115,651 - CCNA_00104 0.52 +1.0 115,651 - CCNA_00104 0.52 +1.9 115,667 - CCNA_00104 0.54 -0.6 115,731 + CCNA_00104 0.63 +1.1 115,739 - CCNA_00104 0.64 +1.2 115,746 - CCNA_00104 0.65 +0.9 115,756 + CCNA_00104 0.67 -0.3 115,760 + CCNA_00104 0.67 -0.1 115,760 + CCNA_00104 0.67 -0.3 115,762 - CCNA_00104 0.67 +1.4 115,763 - CCNA_00104 0.68 +0.9 115,768 - CCNA_00104 0.68 +1.0 115,780 - CCNA_00104 0.70 +0.6 115,802 - CCNA_00104 0.73 +0.9 115,827 + CCNA_00104 0.77 -0.5 115,852 + CCNA_00104 0.80 +0.3 115,884 - CCNA_00104 0.85 +0.6 115,916 - CCNA_00104 0.89 +0.2 115,954 + +0.3 115,955 - +1.6 115,967 + -0.2 115,978 + +0.2 115,986 - +1.4 116,018 + -1.6 116,025 - -1.1 116,039 + -0.4 116,064 - -2.3 116,720 + -1.8 116,770 - +0.2 116,794 + +3.2 116,794 + +0.2 116,794 + +0.6 116,802 - -1.1 116,802 - -1.9 116,802 - -1.3 116,802 - -2.0 116,802 - -1.0 116,802 - +0.1 116,867 + +0.2
Or see this region's nucleotide sequence