Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29155 and AZOBR_RS29160 are separated by 149 nucleotides AZOBR_RS29160 and AZOBR_RS29165 are separated by 597 nucleotides
AZOBR_RS29155: AZOBR_RS29155 - hypothetical protein, at 665,562 to 666,539
_RS29155
AZOBR_RS29160: AZOBR_RS29160 - putative RNA polymerase sigma-70 factor ECF subfamily, at 666,689 to 667,213
_RS29160
AZOBR_RS29165: AZOBR_RS29165 - hypothetical protein, at 667,811 to 668,326
_RS29165
Position (kb) 666
667
668 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 666.275 kb on + strand, within AZOBR_RS29155 at 666.276 kb on - strand, within AZOBR_RS29155 at 666.276 kb on - strand, within AZOBR_RS29155 at 666.626 kb on + strand at 666.712 kb on + strand at 666.712 kb on + strand at 666.712 kb on + strand at 666.713 kb on - strand at 666.713 kb on - strand at 666.750 kb on + strand, within AZOBR_RS29160 at 666.750 kb on + strand, within AZOBR_RS29160 at 666.750 kb on + strand, within AZOBR_RS29160 at 666.751 kb on - strand, within AZOBR_RS29160 at 666.751 kb on - strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.377 kb on + strand at 667.396 kb on + strand at 667.454 kb on + strand at 667.882 kb on + strand, within AZOBR_RS29165 at 667.950 kb on + strand, within AZOBR_RS29165 at 667.950 kb on + strand, within AZOBR_RS29165 at 667.951 kb on - strand, within AZOBR_RS29165 at 668.190 kb on + strand, within AZOBR_RS29165 at 668.190 kb on + strand, within AZOBR_RS29165 at 668.191 kb on - strand, within AZOBR_RS29165
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 666,275 + AZOBR_RS29155 0.73 -0.5 666,276 - AZOBR_RS29155 0.73 -1.7 666,276 - AZOBR_RS29155 0.73 -1.0 666,626 + -4.1 666,712 + -0.0 666,712 + +0.7 666,712 + +0.1 666,713 - +0.1 666,713 - -4.1 666,750 + AZOBR_RS29160 0.12 +0.0 666,750 + AZOBR_RS29160 0.12 -1.4 666,750 + AZOBR_RS29160 0.12 -0.1 666,751 - AZOBR_RS29160 0.12 +1.3 666,751 - AZOBR_RS29160 0.12 +0.2 666,819 + AZOBR_RS29160 0.25 -0.7 666,819 + AZOBR_RS29160 0.25 +2.8 666,819 + AZOBR_RS29160 0.25 +1.0 666,820 - AZOBR_RS29160 0.25 -1.1 666,820 - AZOBR_RS29160 0.25 -1.4 667,020 + AZOBR_RS29160 0.63 -2.8 667,020 + AZOBR_RS29160 0.63 -0.8 667,020 + AZOBR_RS29160 0.63 +0.4 667,020 + AZOBR_RS29160 0.63 +0.4 667,021 - AZOBR_RS29160 0.63 +1.2 667,021 - AZOBR_RS29160 0.63 +0.1 667,021 - AZOBR_RS29160 0.63 +0.2 667,021 - AZOBR_RS29160 0.63 +0.2 667,021 - AZOBR_RS29160 0.63 -0.8 667,021 - AZOBR_RS29160 0.63 -0.6 667,021 - AZOBR_RS29160 0.63 +0.6 667,377 + -0.3 667,396 + -4.1 667,454 + -0.2 667,882 + AZOBR_RS29165 0.14 -1.5 667,950 + AZOBR_RS29165 0.27 -0.3 667,950 + AZOBR_RS29165 0.27 -0.9 667,951 - AZOBR_RS29165 0.27 +0.4 668,190 + AZOBR_RS29165 0.73 -0.2 668,190 + AZOBR_RS29165 0.73 +1.5 668,191 - AZOBR_RS29165 0.74 -1.4
Or see this region's nucleotide sequence