Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22760

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22755 and AZOBR_RS22760 are separated by 87 nucleotidesAZOBR_RS22760 and AZOBR_RS22765 are separated by 17 nucleotides AZOBR_RS22755: AZOBR_RS22755 - dihydropyrimidinase, at 115,329 to 116,765 _RS22755 AZOBR_RS22760: AZOBR_RS22760 - Asp/Glu/hydantoin racemase, at 116,853 to 117,584 _RS22760 AZOBR_RS22765: AZOBR_RS22765 - hydrolase, at 117,602 to 118,933 _RS22765 Position (kb) 116 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 115.963 kb on + strand, within AZOBR_RS22755at 115.963 kb on + strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.323 kb on + strand, within AZOBR_RS22755at 116.437 kb on + strand, within AZOBR_RS22755at 116.437 kb on + strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.845 kb on + strandat 116.845 kb on + strandat 117.163 kb on + strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.200 kb on - strand, within AZOBR_RS22760at 117.458 kb on - strand, within AZOBR_RS22760at 117.584 kb on + strandat 117.585 kb on - strandat 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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115,963 + AZOBR_RS22755 0.44 -1.9
115,963 + AZOBR_RS22755 0.44 +0.1
115,964 - AZOBR_RS22755 0.44 -1.7
115,964 - AZOBR_RS22755 0.44 -0.2
115,964 - AZOBR_RS22755 0.44 +0.8
116,305 + AZOBR_RS22755 0.68 -3.6
116,305 + AZOBR_RS22755 0.68 -2.2
116,305 + AZOBR_RS22755 0.68 +0.3
116,305 + AZOBR_RS22755 0.68 -1.0
116,305 + AZOBR_RS22755 0.68 +1.7
116,306 - AZOBR_RS22755 0.68 +0.5
116,306 - AZOBR_RS22755 0.68 +0.6
116,306 - AZOBR_RS22755 0.68 +0.2
116,306 - AZOBR_RS22755 0.68 -2.7
116,323 + AZOBR_RS22755 0.69 -4.0
116,437 + AZOBR_RS22755 0.77 +0.5
116,437 + AZOBR_RS22755 0.77 +0.7
116,438 - AZOBR_RS22755 0.77 +0.2
116,438 - AZOBR_RS22755 0.77 +0.3
116,438 - AZOBR_RS22755 0.77 -1.8
116,845 + +0.1
116,845 + -0.8
117,163 + AZOBR_RS22760 0.42 -0.0
117,164 - AZOBR_RS22760 0.42 +1.5
117,164 - AZOBR_RS22760 0.42 +0.9
117,199 + AZOBR_RS22760 0.47 -0.7
117,199 + AZOBR_RS22760 0.47 +3.1
117,200 - AZOBR_RS22760 0.47 -0.5
117,458 - AZOBR_RS22760 0.83 +0.9
117,584 + +0.5
117,585 - -0.1
118,137 + AZOBR_RS22765 0.40 -0.3
118,137 + AZOBR_RS22765 0.40 -2.7
118,137 + AZOBR_RS22765 0.40 -0.5
118,137 + AZOBR_RS22765 0.40 +0.5
118,138 - AZOBR_RS22765 0.40 -0.7
118,138 - AZOBR_RS22765 0.40 +0.0
118,138 - AZOBR_RS22765 0.40 -2.2
118,138 - AZOBR_RS22765 0.40 -0.0
118,138 - AZOBR_RS22765 0.40 -3.4

Or see this region's nucleotide sequence