Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17090 and AZOBR_RS17095 are separated by 724 nucleotides AZOBR_RS17095 and AZOBR_RS17100 overlap by 12 nucleotides AZOBR_RS17100 and AZOBR_RS17105 are separated by 158 nucleotides
AZOBR_RS17090: AZOBR_RS17090 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 588,746 to 591,331
_RS17090
AZOBR_RS17095: AZOBR_RS17095 - exported protein of unknown function, at 592,056 to 592,475
_RS17095
AZOBR_RS17100: AZOBR_RS17100 - AraC family transcriptional regulator, at 592,464 to 593,231
_RS17100
AZOBR_RS17105: AZOBR_RS17105 - Fosmidomycin resistance protein, at 593,390 to 594,595
_RS17105
Position (kb) 592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 591.460 kb on + strand at 591.623 kb on + strand at 591.624 kb on - strand at 591.843 kb on + strand at 591.843 kb on + strand at 591.844 kb on - strand at 591.844 kb on - strand at 591.844 kb on - strand at 591.844 kb on - strand at 592.123 kb on - strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.136 kb on + strand, within AZOBR_RS17095 at 592.137 kb on - strand, within AZOBR_RS17095 at 592.137 kb on - strand, within AZOBR_RS17095 at 592.137 kb on - strand, within AZOBR_RS17095 at 592.137 kb on - strand, within AZOBR_RS17095 at 592.137 kb on - strand, within AZOBR_RS17095 at 592.138 kb on + strand, within AZOBR_RS17095 at 592.138 kb on + strand, within AZOBR_RS17095 at 592.139 kb on - strand, within AZOBR_RS17095 at 592.139 kb on - strand, within AZOBR_RS17095 at 592.146 kb on + strand, within AZOBR_RS17095 at 592.252 kb on + strand, within AZOBR_RS17095 at 592.252 kb on + strand, within AZOBR_RS17095 at 592.252 kb on + strand, within AZOBR_RS17095 at 592.253 kb on - strand, within AZOBR_RS17095 at 592.274 kb on + strand, within AZOBR_RS17095 at 592.275 kb on - strand, within AZOBR_RS17095 at 592.288 kb on + strand, within AZOBR_RS17095 at 592.289 kb on - strand, within AZOBR_RS17095 at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.493 kb on - strand at 592.493 kb on - strand at 592.556 kb on - strand, within AZOBR_RS17100 at 592.991 kb on - strand, within AZOBR_RS17100 at 593.307 kb on + strand at 593.307 kb on + strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 591,460 + -0.1 591,623 + -0.8 591,624 - -2.5 591,843 + +0.5 591,843 + +0.8 591,844 - +1.0 591,844 - -0.6 591,844 - -1.1 591,844 - -3.5 592,123 - AZOBR_RS17095 0.16 -0.5 592,136 + AZOBR_RS17095 0.19 -2.5 592,136 + AZOBR_RS17095 0.19 -0.5 592,136 + AZOBR_RS17095 0.19 +0.8 592,136 + AZOBR_RS17095 0.19 -2.3 592,136 + AZOBR_RS17095 0.19 -1.0 592,136 + AZOBR_RS17095 0.19 +0.2 592,136 + AZOBR_RS17095 0.19 -2.5 592,136 + AZOBR_RS17095 0.19 -0.1 592,136 + AZOBR_RS17095 0.19 +0.0 592,136 + AZOBR_RS17095 0.19 +0.2 592,136 + AZOBR_RS17095 0.19 -3.4 592,137 - AZOBR_RS17095 0.19 +0.3 592,137 - AZOBR_RS17095 0.19 -0.8 592,137 - AZOBR_RS17095 0.19 -0.6 592,137 - AZOBR_RS17095 0.19 +0.3 592,137 - AZOBR_RS17095 0.19 -0.5 592,138 + AZOBR_RS17095 0.20 -0.0 592,138 + AZOBR_RS17095 0.20 -1.5 592,139 - AZOBR_RS17095 0.20 +1.8 592,139 - AZOBR_RS17095 0.20 +1.0 592,146 + AZOBR_RS17095 0.21 -0.5 592,252 + AZOBR_RS17095 0.47 -1.9 592,252 + AZOBR_RS17095 0.47 +0.0 592,252 + AZOBR_RS17095 0.47 -0.1 592,253 - AZOBR_RS17095 0.47 -1.8 592,274 + AZOBR_RS17095 0.52 -2.1 592,275 - AZOBR_RS17095 0.52 +0.5 592,288 + AZOBR_RS17095 0.55 -0.1 592,289 - AZOBR_RS17095 0.55 -1.1 592,492 + -0.1 592,492 + +0.7 592,492 + -1.5 592,492 + -0.1 592,492 + +1.6 592,492 + -0.2 592,492 + +0.3 592,493 - -0.6 592,493 - -3.9 592,556 - AZOBR_RS17100 0.12 +0.5 592,991 - AZOBR_RS17100 0.69 +1.2 593,307 + -2.3 593,307 + -1.2 593,308 - -0.1 593,308 - -0.6 593,308 - -0.6 593,308 - -0.1 593,308 - +1.1 593,308 - +0.4
Or see this region's nucleotide sequence