Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16220 and AZOBR_RS16225 are separated by 264 nucleotides
AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567
_RS16220
AZOBR_RS16225: AZOBR_RS16225 - hypothetical protein, at 389,832 to 391,121
_RS16225
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.849 kb on - strand, within AZOBR_RS16220 at 388.849 kb on - strand, within AZOBR_RS16220 at 388.884 kb on + strand, within AZOBR_RS16220 at 388.971 kb on + strand, within AZOBR_RS16220 at 389.565 kb on + strand at 389.566 kb on - strand at 389.716 kb on + strand at 389.719 kb on + strand at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.141 kb on + strand, within AZOBR_RS16225 at 390.142 kb on - strand, within AZOBR_RS16225 at 390.235 kb on - strand, within AZOBR_RS16225 at 390.252 kb on + strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.486 kb on + strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.529 kb on - strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.562 kb on - strand, within AZOBR_RS16225 at 391.014 kb on + strand at 391.014 kb on + strand at 391.293 kb on + strand at 391.313 kb on - strand at 391.612 kb on - strand at 391.675 kb on - strand at 391.918 kb on + strand at 391.918 kb on + strand at 391.919 kb on - strand at 391.919 kb on - strand at 392.119 kb on + strand at 392.119 kb on + strand at 392.119 kb on + strand at 392.120 kb on - strand at 392.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 388,849 - AZOBR_RS16220 0.38 +0.5 388,849 - AZOBR_RS16220 0.38 -0.2 388,884 + AZOBR_RS16220 0.41 +1.6 388,971 + AZOBR_RS16220 0.49 -1.9 389,565 + +0.8 389,566 - +1.0 389,716 + +0.9 389,719 + +1.5 390,096 + AZOBR_RS16225 0.20 -1.7 390,096 + AZOBR_RS16225 0.20 +1.3 390,096 + AZOBR_RS16225 0.20 -2.8 390,141 + AZOBR_RS16225 0.24 +1.1 390,142 - AZOBR_RS16225 0.24 +1.3 390,235 - AZOBR_RS16225 0.31 +0.9 390,252 + AZOBR_RS16225 0.33 -0.5 390,475 - AZOBR_RS16225 0.50 +1.5 390,475 - AZOBR_RS16225 0.50 +1.9 390,486 + AZOBR_RS16225 0.51 +0.8 390,487 - AZOBR_RS16225 0.51 -0.1 390,487 - AZOBR_RS16225 0.51 +0.4 390,487 - AZOBR_RS16225 0.51 +1.1 390,487 - AZOBR_RS16225 0.51 +1.1 390,529 - AZOBR_RS16225 0.54 +1.8 390,561 + AZOBR_RS16225 0.57 -2.6 390,561 + AZOBR_RS16225 0.57 -3.5 390,561 + AZOBR_RS16225 0.57 +1.3 390,561 + AZOBR_RS16225 0.57 +1.0 390,562 - AZOBR_RS16225 0.57 +0.3 391,014 + +0.8 391,014 + +0.4 391,293 + -0.5 391,313 - -2.5 391,612 - -2.3 391,675 - +1.1 391,918 + +0.7 391,918 + -2.1 391,919 - +1.2 391,919 - -0.7 392,119 + -0.9 392,119 + -0.3 392,119 + -0.2 392,120 - -1.7 392,120 - +0.1
Or see this region's nucleotide sequence