Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24710 and AO356_24715 are separated by 330 nucleotides AO356_24715 and AO356_24720 are separated by 120 nucleotides AO356_24720 and AO356_24725 are separated by 195 nucleotides AO356_24725 and AO356_24730 are separated by 155 nucleotides
AO356_24710: AO356_24710 - cupin, at 5,592,261 to 5,592,665
_24710
AO356_24715: AO356_24715 - antibiotic biosynthesis monooxygenase, at 5,592,996 to 5,593,289
_24715
AO356_24720: AO356_24720 - DNA-binding protein, at 5,593,410 to 5,594,843
_24720
AO356_24725: AO356_24725 - alkylhydroperoxidase, at 5,595,039 to 5,595,479
_24725
AO356_24730: AO356_24730 - hypothetical protein, at 5,595,635 to 5,595,961
_24730
Position (kb) 5593
5594
5595 Strain fitness (log2 ratio) -2
-1
0
1 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.610 kb on + strand, within AO356_24710 at 5592.652 kb on + strand at 5592.653 kb on - strand at 5592.726 kb on - strand at 5593.166 kb on + strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.168 kb on + strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.263 kb on + strand at 5593.391 kb on + strand at 5593.392 kb on - strand at 5593.540 kb on + strand at 5593.616 kb on + strand, within AO356_24720 at 5593.616 kb on + strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720 at 5593.706 kb on - strand, within AO356_24720 at 5593.706 kb on - strand, within AO356_24720 at 5593.978 kb on + strand, within AO356_24720 at 5593.978 kb on + strand, within AO356_24720 at 5594.089 kb on + strand, within AO356_24720 at 5594.089 kb on + strand, within AO356_24720 at 5594.090 kb on - strand, within AO356_24720 at 5594.383 kb on + strand, within AO356_24720 at 5594.385 kb on + strand, within AO356_24720 at 5594.385 kb on + strand, within AO356_24720 at 5594.386 kb on - strand, within AO356_24720 at 5594.488 kb on + strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.660 kb on - strand, within AO356_24720 at 5594.674 kb on + strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.791 kb on + strand at 5594.917 kb on + strand at 5594.918 kb on - strand at 5594.918 kb on - strand at 5595.060 kb on + strand at 5595.060 kb on + strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.246 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.361 kb on - strand, within AO356_24725 at 5595.688 kb on + strand, within AO356_24730 at 5595.689 kb on - strand, within AO356_24730 at 5595.841 kb on - strand, within AO356_24730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 5,592,457 + AO356_24710 0.48 -0.2 5,592,457 + AO356_24710 0.48 +0.3 5,592,457 + AO356_24710 0.48 +0.2 5,592,512 - AO356_24710 0.62 -0.2 5,592,512 - AO356_24710 0.62 +0.2 5,592,610 + AO356_24710 0.86 -0.1 5,592,652 + +0.2 5,592,653 - -1.7 5,592,726 - +0.6 5,593,166 + AO356_24715 0.58 +0.4 5,593,167 - AO356_24715 0.58 +0.4 5,593,167 - AO356_24715 0.58 -0.5 5,593,168 + AO356_24715 0.59 +0.1 5,593,169 - AO356_24715 0.59 +0.4 5,593,169 - AO356_24715 0.59 -0.1 5,593,169 - AO356_24715 0.59 -0.1 5,593,169 - AO356_24715 0.59 -0.3 5,593,263 + +0.2 5,593,391 + +0.5 5,593,392 - -2.0 5,593,540 + -0.7 5,593,616 + AO356_24720 0.14 +0.7 5,593,616 + AO356_24720 0.14 +0.3 5,593,617 - AO356_24720 0.14 -0.3 5,593,617 - AO356_24720 0.14 +0.4 5,593,706 - AO356_24720 0.21 +0.1 5,593,706 - AO356_24720 0.21 +0.1 5,593,978 + AO356_24720 0.40 +0.1 5,593,978 + AO356_24720 0.40 +0.4 5,594,089 + AO356_24720 0.47 +0.3 5,594,089 + AO356_24720 0.47 +1.2 5,594,090 - AO356_24720 0.47 -0.3 5,594,383 + AO356_24720 0.68 +0.1 5,594,385 + AO356_24720 0.68 +0.1 5,594,385 + AO356_24720 0.68 +0.0 5,594,386 - AO356_24720 0.68 +0.5 5,594,488 + AO356_24720 0.75 +0.1 5,594,621 - AO356_24720 0.84 +0.3 5,594,621 - AO356_24720 0.84 -0.6 5,594,621 - AO356_24720 0.84 +0.4 5,594,660 - AO356_24720 0.87 +0.1 5,594,674 + AO356_24720 0.88 +0.5 5,594,675 - AO356_24720 0.88 -0.7 5,594,675 - AO356_24720 0.88 +0.5 5,594,791 + +0.3 5,594,917 + -1.0 5,594,918 - +0.4 5,594,918 - +0.2 5,595,060 + -0.9 5,595,060 + -0.8 5,595,061 - +0.3 5,595,061 - +0.1 5,595,061 - -0.8 5,595,246 + AO356_24725 0.47 +0.2 5,595,360 + AO356_24725 0.73 +1.0 5,595,360 + AO356_24725 0.73 -0.4 5,595,361 - AO356_24725 0.73 +0.5 5,595,688 + AO356_24730 0.16 -0.1 5,595,689 - AO356_24730 0.17 +0.0 5,595,841 - AO356_24730 0.63 +0.7
Or see this region's nucleotide sequence