Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21965 and AO356_21970 overlap by 4 nucleotides AO356_21970 and AO356_21975 overlap by 8 nucleotides AO356_21975 and AO356_21980 are separated by 118 nucleotides
AO356_21965: AO356_21965 - LysR family transcriptional regulator, at 4,917,465 to 4,918,412
_21965
AO356_21970: AO356_21970 - LysR family transcriptional regulator, at 4,918,409 to 4,918,822
_21970
AO356_21975: AO356_21975 - antibiotic biosynthesis monooxygenase, at 4,918,815 to 4,919,450
_21975
AO356_21980: AO356_21980 - amidohydrolase, at 4,919,569 to 4,921,407
_21980
Position (kb)
4918
4919
4920 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4917.930 kb on + strand, within AO356_21965 at 4917.930 kb on + strand, within AO356_21965 at 4917.930 kb on + strand, within AO356_21965 at 4917.931 kb on - strand, within AO356_21965 at 4917.931 kb on - strand, within AO356_21965 at 4918.035 kb on + strand, within AO356_21965 at 4918.036 kb on - strand, within AO356_21965 at 4918.089 kb on - strand, within AO356_21965 at 4918.207 kb on - strand, within AO356_21965 at 4918.207 kb on - strand, within AO356_21965 at 4918.517 kb on + strand, within AO356_21970 at 4918.518 kb on - strand, within AO356_21970 at 4918.743 kb on + strand, within AO356_21970 at 4918.743 kb on + strand, within AO356_21970 at 4918.744 kb on - strand, within AO356_21970 at 4918.744 kb on - strand, within AO356_21970 at 4918.747 kb on + strand, within AO356_21970 at 4918.747 kb on + strand, within AO356_21970 at 4918.748 kb on - strand, within AO356_21970 at 4918.748 kb on - strand, within AO356_21970 at 4918.755 kb on + strand, within AO356_21970 at 4918.756 kb on - strand, within AO356_21970 at 4918.927 kb on - strand, within AO356_21975 at 4918.927 kb on - strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.310 kb on + strand, within AO356_21975 at 4919.311 kb on - strand, within AO356_21975 at 4919.311 kb on - strand, within AO356_21975 at 4919.311 kb on - strand, within AO356_21975 at 4919.361 kb on + strand, within AO356_21975 at 4919.361 kb on + strand, within AO356_21975 at 4919.362 kb on - strand, within AO356_21975 at 4919.362 kb on - strand, within AO356_21975 at 4919.362 kb on - strand, within AO356_21975 at 4919.362 kb on - strand, within AO356_21975 at 4919.449 kb on - strand at 4919.547 kb on + strand at 4919.547 kb on + strand at 4919.548 kb on - strand at 4919.588 kb on + strand at 4919.797 kb on + strand, within AO356_21980 at 4919.797 kb on + strand, within AO356_21980 at 4919.797 kb on + strand, within AO356_21980 at 4919.798 kb on - strand, within AO356_21980 at 4919.798 kb on - strand, within AO356_21980 at 4919.798 kb on - strand, within AO356_21980 at 4919.798 kb on - strand, within AO356_21980 at 4920.004 kb on + strand, within AO356_21980 at 4920.005 kb on - strand, within AO356_21980 at 4920.152 kb on - strand, within AO356_21980 at 4920.190 kb on + strand, within AO356_21980 at 4920.292 kb on + strand, within AO356_21980 at 4920.292 kb on + strand, within AO356_21980 at 4920.293 kb on - strand, within AO356_21980 at 4920.346 kb on + strand, within AO356_21980 at 4920.347 kb on - strand, within AO356_21980 at 4920.347 kb on - strand, within AO356_21980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 4,917,930 + AO356_21965 0.49 +0.8 4,917,930 + AO356_21965 0.49 +0.2 4,917,930 + AO356_21965 0.49 +0.3 4,917,931 - AO356_21965 0.49 -0.3 4,917,931 - AO356_21965 0.49 +0.5 4,918,035 + AO356_21965 0.60 -0.9 4,918,036 - AO356_21965 0.60 -0.2 4,918,089 - AO356_21965 0.66 +0.0 4,918,207 - AO356_21965 0.78 +0.2 4,918,207 - AO356_21965 0.78 +0.6 4,918,517 + AO356_21970 0.26 +0.4 4,918,518 - AO356_21970 0.26 +1.2 4,918,743 + AO356_21970 0.81 -0.1 4,918,743 + AO356_21970 0.81 +1.0 4,918,744 - AO356_21970 0.81 -0.2 4,918,744 - AO356_21970 0.81 -1.7 4,918,747 + AO356_21970 0.82 -0.3 4,918,747 + AO356_21970 0.82 -0.4 4,918,748 - AO356_21970 0.82 -0.5 4,918,748 - AO356_21970 0.82 -0.2 4,918,755 + AO356_21970 0.84 +0.0 4,918,756 - AO356_21970 0.84 +0.6 4,918,927 - AO356_21975 0.18 -0.7 4,918,927 - AO356_21975 0.18 -2.9 4,919,310 + AO356_21975 0.78 +0.4 4,919,310 + AO356_21975 0.78 +0.2 4,919,310 + AO356_21975 0.78 -0.4 4,919,310 + AO356_21975 0.78 +0.1 4,919,310 + AO356_21975 0.78 -0.1 4,919,310 + AO356_21975 0.78 -0.1 4,919,311 - AO356_21975 0.78 +0.4 4,919,311 - AO356_21975 0.78 +0.5 4,919,311 - AO356_21975 0.78 -0.8 4,919,361 + AO356_21975 0.86 +1.2 4,919,361 + AO356_21975 0.86 +0.9 4,919,362 - AO356_21975 0.86 +0.8 4,919,362 - AO356_21975 0.86 +1.1 4,919,362 - AO356_21975 0.86 +1.3 4,919,362 - AO356_21975 0.86 +0.2 4,919,449 - -0.0 4,919,547 + -0.3 4,919,547 + -0.7 4,919,548 - +0.1 4,919,588 + +0.3 4,919,797 + AO356_21980 0.12 +0.8 4,919,797 + AO356_21980 0.12 +0.3 4,919,797 + AO356_21980 0.12 +1.4 4,919,798 - AO356_21980 0.12 +0.5 4,919,798 - AO356_21980 0.12 +0.7 4,919,798 - AO356_21980 0.12 +0.2 4,919,798 - AO356_21980 0.12 +0.3 4,920,004 + AO356_21980 0.24 +0.3 4,920,005 - AO356_21980 0.24 +0.5 4,920,152 - AO356_21980 0.32 -0.4 4,920,190 + AO356_21980 0.34 +0.0 4,920,292 + AO356_21980 0.39 +0.2 4,920,292 + AO356_21980 0.39 +1.4 4,920,293 - AO356_21980 0.39 -0.5 4,920,346 + AO356_21980 0.42 -1.0 4,920,347 - AO356_21980 0.42 -0.1 4,920,347 - AO356_21980 0.42 +0.1
Or see this region's nucleotide sequence