Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18440 and AO356_18445 are separated by 13 nucleotides AO356_18445 and AO356_18450 are separated by 155 nucleotides
AO356_18440: AO356_18440 - acriflavine resistance protein B, at 4,149,292 to 4,152,318
_18440
AO356_18445: AO356_18445 - RND transporter, at 4,152,332 to 4,153,480
_18445
AO356_18450: AO356_18450 - outer membrane component of uptake system, probably for ferrous iron (from data) , at 4,153,636 to 4,154,733
_18450
Position (kb)
4152
4153
4154 Strain fitness (log2 ratio)
-1
0
1 at 4151.343 kb on + strand, within AO356_18440 at 4151.343 kb on + strand, within AO356_18440 at 4151.344 kb on - strand, within AO356_18440 at 4151.478 kb on - strand, within AO356_18440 at 4151.478 kb on - strand, within AO356_18440 at 4151.478 kb on - strand, within AO356_18440 at 4151.516 kb on + strand, within AO356_18440 at 4151.516 kb on + strand, within AO356_18440 at 4151.516 kb on + strand, within AO356_18440 at 4151.516 kb on + strand, within AO356_18440 at 4151.516 kb on + strand, within AO356_18440 at 4151.517 kb on - strand, within AO356_18440 at 4151.651 kb on + strand, within AO356_18440 at 4151.651 kb on + strand, within AO356_18440 at 4151.651 kb on + strand, within AO356_18440 at 4151.651 kb on + strand, within AO356_18440 at 4151.651 kb on + strand, within AO356_18440 at 4151.652 kb on - strand, within AO356_18440 at 4151.652 kb on - strand, within AO356_18440 at 4151.652 kb on - strand, within AO356_18440 at 4151.852 kb on + strand, within AO356_18440 at 4151.852 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.900 kb on + strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4151.901 kb on - strand, within AO356_18440 at 4152.038 kb on + strand at 4152.039 kb on - strand at 4152.039 kb on - strand at 4152.039 kb on - strand at 4152.083 kb on + strand at 4152.083 kb on + strand at 4152.083 kb on + strand at 4152.084 kb on - strand at 4152.084 kb on - strand at 4152.134 kb on + strand at 4152.134 kb on + strand at 4152.135 kb on - strand at 4152.168 kb on - strand at 4152.253 kb on + strand at 4152.254 kb on - strand at 4152.254 kb on - strand at 4152.585 kb on + strand, within AO356_18445 at 4152.585 kb on + strand, within AO356_18445 at 4152.585 kb on + strand, within AO356_18445 at 4152.585 kb on + strand, within AO356_18445 at 4152.585 kb on + strand, within AO356_18445 at 4152.585 kb on + strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.586 kb on - strand, within AO356_18445 at 4152.609 kb on + strand, within AO356_18445 at 4152.610 kb on - strand, within AO356_18445 at 4152.610 kb on - strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.880 kb on - strand, within AO356_18445 at 4152.880 kb on - strand, within AO356_18445 at 4153.414 kb on - strand at 4153.433 kb on + strand at 4153.433 kb on + strand at 4153.514 kb on + strand at 4153.514 kb on + strand at 4153.515 kb on - strand at 4153.515 kb on - strand at 4153.520 kb on + strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.533 kb on + strand at 4153.533 kb on + strand at 4153.534 kb on - strand at 4153.551 kb on + strand at 4153.718 kb on + strand at 4153.718 kb on + strand at 4153.721 kb on + strand at 4153.721 kb on + strand at 4153.722 kb on - strand at 4153.910 kb on + strand, within AO356_18450 at 4153.910 kb on + strand, within AO356_18450 at 4153.910 kb on + strand, within AO356_18450 at 4154.269 kb on + strand, within AO356_18450 at 4154.269 kb on + strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.309 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.361 kb on - strand, within AO356_18450 at 4154.399 kb on + strand, within AO356_18450 at 4154.399 kb on + strand, within AO356_18450 at 4154.400 kb on - strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.466 kb on - strand, within AO356_18450
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 4,151,343 + AO356_18440 0.68 +0.1 4,151,343 + AO356_18440 0.68 -0.5 4,151,344 - AO356_18440 0.68 -1.2 4,151,478 - AO356_18440 0.72 -0.0 4,151,478 - AO356_18440 0.72 +0.0 4,151,478 - AO356_18440 0.72 -0.1 4,151,516 + AO356_18440 0.73 +0.2 4,151,516 + AO356_18440 0.73 -1.0 4,151,516 + AO356_18440 0.73 +0.8 4,151,516 + AO356_18440 0.73 -0.6 4,151,516 + AO356_18440 0.73 +0.1 4,151,517 - AO356_18440 0.74 -0.4 4,151,651 + AO356_18440 0.78 -1.2 4,151,651 + AO356_18440 0.78 -0.3 4,151,651 + AO356_18440 0.78 +0.5 4,151,651 + AO356_18440 0.78 -0.1 4,151,651 + AO356_18440 0.78 +0.3 4,151,652 - AO356_18440 0.78 -0.8 4,151,652 - AO356_18440 0.78 +0.7 4,151,652 - AO356_18440 0.78 +0.0 4,151,852 + AO356_18440 0.85 +0.6 4,151,852 + AO356_18440 0.85 -0.0 4,151,900 + AO356_18440 0.86 -0.4 4,151,900 + AO356_18440 0.86 -0.3 4,151,900 + AO356_18440 0.86 -0.4 4,151,900 + AO356_18440 0.86 +0.4 4,151,900 + AO356_18440 0.86 +0.0 4,151,900 + AO356_18440 0.86 -0.8 4,151,900 + AO356_18440 0.86 +0.2 4,151,901 - AO356_18440 0.86 +0.3 4,151,901 - AO356_18440 0.86 -0.4 4,151,901 - AO356_18440 0.86 -0.2 4,151,901 - AO356_18440 0.86 +0.1 4,151,901 - AO356_18440 0.86 -0.8 4,151,901 - AO356_18440 0.86 +0.8 4,151,901 - AO356_18440 0.86 -0.2 4,152,038 + +0.3 4,152,039 - +0.8 4,152,039 - -0.4 4,152,039 - -0.1 4,152,083 + +0.6 4,152,083 + +0.4 4,152,083 + -0.4 4,152,084 - -0.4 4,152,084 - +0.6 4,152,134 + +0.0 4,152,134 + -0.7 4,152,135 - +1.3 4,152,168 - -0.4 4,152,253 + -0.1 4,152,254 - -0.2 4,152,254 - +0.3 4,152,585 + AO356_18445 0.22 +0.8 4,152,585 + AO356_18445 0.22 -0.2 4,152,585 + AO356_18445 0.22 +0.6 4,152,585 + AO356_18445 0.22 +0.1 4,152,585 + AO356_18445 0.22 +0.5 4,152,585 + AO356_18445 0.22 -0.0 4,152,586 - AO356_18445 0.22 +0.7 4,152,586 - AO356_18445 0.22 -0.2 4,152,586 - AO356_18445 0.22 +0.3 4,152,586 - AO356_18445 0.22 -0.8 4,152,586 - AO356_18445 0.22 +1.0 4,152,586 - AO356_18445 0.22 +0.6 4,152,586 - AO356_18445 0.22 +0.5 4,152,586 - AO356_18445 0.22 +1.2 4,152,609 + AO356_18445 0.24 +0.2 4,152,610 - AO356_18445 0.24 +0.2 4,152,610 - AO356_18445 0.24 +1.1 4,152,867 + AO356_18445 0.47 +0.4 4,152,867 + AO356_18445 0.47 -0.1 4,152,867 + AO356_18445 0.47 -0.3 4,152,867 + AO356_18445 0.47 -0.5 4,152,868 - AO356_18445 0.47 +1.4 4,152,868 - AO356_18445 0.47 +0.1 4,152,868 - AO356_18445 0.47 +1.0 4,152,868 - AO356_18445 0.47 +0.3 4,152,880 - AO356_18445 0.48 +0.9 4,152,880 - AO356_18445 0.48 -1.0 4,153,414 - -0.2 4,153,433 + +0.6 4,153,433 + -0.2 4,153,514 + +0.2 4,153,514 + +0.3 4,153,515 - +0.2 4,153,515 - -0.1 4,153,520 + +0.1 4,153,521 - -0.5 4,153,521 - +1.1 4,153,521 - -0.6 4,153,521 - +0.3 4,153,533 + +0.7 4,153,533 + +0.8 4,153,534 - +0.1 4,153,551 + +0.4 4,153,718 + +0.3 4,153,718 + -0.2 4,153,721 + +0.6 4,153,721 + +0.1 4,153,722 - +0.3 4,153,910 + AO356_18450 0.25 +0.2 4,153,910 + AO356_18450 0.25 +0.9 4,153,910 + AO356_18450 0.25 +0.7 4,154,269 + AO356_18450 0.58 +0.2 4,154,269 + AO356_18450 0.58 +0.3 4,154,270 - AO356_18450 0.58 -0.1 4,154,270 - AO356_18450 0.58 +0.0 4,154,270 - AO356_18450 0.58 +0.4 4,154,270 - AO356_18450 0.58 +0.2 4,154,270 - AO356_18450 0.58 +0.4 4,154,309 + AO356_18450 0.61 +1.2 4,154,360 + AO356_18450 0.66 -1.2 4,154,360 + AO356_18450 0.66 +0.1 4,154,360 + AO356_18450 0.66 -0.0 4,154,360 + AO356_18450 0.66 -0.2 4,154,361 - AO356_18450 0.66 +0.0 4,154,399 + AO356_18450 0.69 +0.9 4,154,399 + AO356_18450 0.69 +0.0 4,154,400 - AO356_18450 0.70 +0.5 4,154,465 + AO356_18450 0.76 -0.1 4,154,465 + AO356_18450 0.76 +0.1 4,154,465 + AO356_18450 0.76 +1.2 4,154,465 + AO356_18450 0.76 -0.1 4,154,466 - AO356_18450 0.76 +0.4
Or see this region's nucleotide sequence