Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18355 and AO356_18360 overlap by 4 nucleotides AO356_18360 and AO356_18365 overlap by 14 nucleotides AO356_18365 and AO356_18370 overlap by 4 nucleotides AO356_18370 and AO356_18375 are separated by 131 nucleotides
AO356_18355: AO356_18355 - electron transporter RnfG, at 4,132,792 to 4,133,400
_18355
AO356_18360: AO356_18360 - electron transporter RnfD, at 4,133,397 to 4,134,377
_18360
AO356_18365: AO356_18365 - (4Fe-4S)-binding protein, at 4,134,364 to 4,135,377
_18365
AO356_18370: AO356_18370 - NADH:quinone oxidoreductase, at 4,135,374 to 4,135,946
_18370
AO356_18375: AO356_18375 - methionine--tRNA ligase, at 4,136,078 to 4,138,123
_18375
Position (kb) 4134
4135
4136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4133.696 kb on + strand, within AO356_18360 at 4133.697 kb on - strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.981 kb on + strand, within AO356_18360 at 4133.982 kb on - strand, within AO356_18360 at 4133.982 kb on - strand, within AO356_18360 at 4133.982 kb on - strand, within AO356_18360 at 4134.013 kb on + strand, within AO356_18360 at 4134.014 kb on - strand, within AO356_18360 at 4134.121 kb on + strand, within AO356_18360 at 4134.121 kb on + strand, within AO356_18360 at 4134.121 kb on + strand, within AO356_18360 at 4134.265 kb on - strand, within AO356_18360 at 4134.265 kb on - strand, within AO356_18360 at 4134.773 kb on - strand, within AO356_18365 at 4135.359 kb on + strand at 4135.360 kb on - strand at 4135.440 kb on + strand, within AO356_18370 at 4135.440 kb on + strand, within AO356_18370 at 4135.441 kb on - strand, within AO356_18370 at 4135.441 kb on - strand, within AO356_18370 at 4135.441 kb on - strand, within AO356_18370 at 4135.469 kb on + strand, within AO356_18370 at 4135.975 kb on - strand at 4135.975 kb on - strand at 4135.982 kb on + strand at 4135.983 kb on - strand at 4135.983 kb on - strand at 4135.983 kb on - strand at 4135.983 kb on - strand at 4136.018 kb on + strand at 4136.018 kb on + strand at 4136.019 kb on - strand at 4136.019 kb on - strand at 4136.019 kb on - strand at 4136.019 kb on - strand at 4136.019 kb on - strand at 4136.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 4,133,696 + AO356_18360 0.30 -0.3 4,133,697 - AO356_18360 0.31 -1.1 4,133,981 + AO356_18360 0.60 -0.2 4,133,981 + AO356_18360 0.60 -0.3 4,133,981 + AO356_18360 0.60 +0.0 4,133,981 + AO356_18360 0.60 -1.9 4,133,981 + AO356_18360 0.60 -0.1 4,133,981 + AO356_18360 0.60 -0.2 4,133,982 - AO356_18360 0.60 -0.9 4,133,982 - AO356_18360 0.60 -0.6 4,133,982 - AO356_18360 0.60 -0.1 4,134,013 + AO356_18360 0.63 -0.7 4,134,014 - AO356_18360 0.63 +0.4 4,134,121 + AO356_18360 0.74 +0.0 4,134,121 + AO356_18360 0.74 -0.9 4,134,121 + AO356_18360 0.74 -0.4 4,134,265 - AO356_18360 0.88 -0.2 4,134,265 - AO356_18360 0.88 +1.1 4,134,773 - AO356_18365 0.40 +1.7 4,135,359 + +0.2 4,135,360 - -0.3 4,135,440 + AO356_18370 0.12 +0.5 4,135,440 + AO356_18370 0.12 +0.4 4,135,441 - AO356_18370 0.12 +0.6 4,135,441 - AO356_18370 0.12 +0.1 4,135,441 - AO356_18370 0.12 -1.7 4,135,469 + AO356_18370 0.17 -0.2 4,135,975 - +0.2 4,135,975 - -0.4 4,135,982 + +0.4 4,135,983 - -0.0 4,135,983 - -0.3 4,135,983 - -0.1 4,135,983 - +0.4 4,136,018 + +0.6 4,136,018 + -2.9 4,136,019 - +0.3 4,136,019 - +0.3 4,136,019 - +0.1 4,136,019 - +0.0 4,136,019 - -0.4 4,136,080 - -0.6
Or see this region's nucleotide sequence