Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17745 and AO356_17750 are separated by 142 nucleotides AO356_17750 and AO356_17755 are separated by 157 nucleotides
AO356_17745: AO356_17745 - alpha/beta hydrolase, at 4,004,510 to 4,005,529
_17745
AO356_17750: AO356_17750 - LysR family transcriptional regulator, at 4,005,672 to 4,006,553
_17750
AO356_17755: AO356_17755 - hypothetical protein, at 4,006,711 to 4,008,342
_17755
Position (kb)
4005
4006
4007 Strain fitness (log2 ratio)
-1
0
1 at 4004.831 kb on + strand, within AO356_17745 at 4004.831 kb on + strand, within AO356_17745 at 4004.832 kb on - strand, within AO356_17745 at 4004.862 kb on - strand, within AO356_17745 at 4004.862 kb on - strand, within AO356_17745 at 4004.862 kb on - strand, within AO356_17745 at 4004.863 kb on + strand, within AO356_17745 at 4004.864 kb on - strand, within AO356_17745 at 4004.916 kb on + strand, within AO356_17745 at 4004.916 kb on + strand, within AO356_17745 at 4004.916 kb on + strand, within AO356_17745 at 4004.917 kb on - strand, within AO356_17745 at 4004.917 kb on - strand, within AO356_17745 at 4004.917 kb on - strand, within AO356_17745 at 4004.931 kb on + strand, within AO356_17745 at 4004.931 kb on + strand, within AO356_17745 at 4004.932 kb on - strand, within AO356_17745 at 4005.197 kb on + strand, within AO356_17745 at 4005.197 kb on + strand, within AO356_17745 at 4005.456 kb on - strand at 4005.530 kb on + strand at 4005.531 kb on - strand at 4005.750 kb on + strand at 4005.750 kb on + strand at 4005.750 kb on + strand at 4005.751 kb on - strand at 4006.123 kb on + strand, within AO356_17750 at 4006.124 kb on - strand, within AO356_17750 at 4006.124 kb on - strand, within AO356_17750 at 4006.124 kb on - strand, within AO356_17750 at 4006.275 kb on + strand, within AO356_17750 at 4006.275 kb on + strand, within AO356_17750 at 4006.276 kb on - strand, within AO356_17750 at 4006.276 kb on - strand, within AO356_17750 at 4006.409 kb on - strand, within AO356_17750 at 4006.585 kb on + strand at 4006.585 kb on + strand at 4006.586 kb on - strand at 4006.586 kb on - strand at 4006.586 kb on - strand at 4006.586 kb on - strand at 4006.586 kb on - strand at 4006.586 kb on - strand at 4006.588 kb on + strand at 4006.633 kb on + strand at 4006.634 kb on - strand at 4006.685 kb on + strand at 4006.730 kb on + strand at 4006.730 kb on + strand at 4006.730 kb on + strand at 4006.731 kb on - strand at 4006.731 kb on - strand at 4006.731 kb on - strand at 4006.742 kb on + strand at 4006.742 kb on + strand at 4006.743 kb on - strand at 4006.805 kb on - strand at 4006.828 kb on - strand at 4006.910 kb on + strand, within AO356_17755 at 4006.910 kb on + strand, within AO356_17755 at 4006.910 kb on + strand, within AO356_17755 at 4006.910 kb on + strand, within AO356_17755 at 4006.910 kb on + strand, within AO356_17755 at 4006.910 kb on + strand, within AO356_17755 at 4006.911 kb on - strand, within AO356_17755 at 4006.911 kb on - strand, within AO356_17755 at 4006.911 kb on - strand, within AO356_17755 at 4007.283 kb on - strand, within AO356_17755 at 4007.545 kb on + strand, within AO356_17755 at 4007.545 kb on + strand, within AO356_17755 at 4007.553 kb on + strand, within AO356_17755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 4,004,831 + AO356_17745 0.31 +0.2 4,004,831 + AO356_17745 0.31 +0.4 4,004,832 - AO356_17745 0.32 +0.8 4,004,862 - AO356_17745 0.35 -0.5 4,004,862 - AO356_17745 0.35 -0.0 4,004,862 - AO356_17745 0.35 -0.2 4,004,863 + AO356_17745 0.35 -0.4 4,004,864 - AO356_17745 0.35 +0.5 4,004,916 + AO356_17745 0.40 -0.9 4,004,916 + AO356_17745 0.40 +0.2 4,004,916 + AO356_17745 0.40 -0.1 4,004,917 - AO356_17745 0.40 -0.1 4,004,917 - AO356_17745 0.40 +0.7 4,004,917 - AO356_17745 0.40 -0.6 4,004,931 + AO356_17745 0.41 +0.2 4,004,931 + AO356_17745 0.41 -1.5 4,004,932 - AO356_17745 0.41 -0.6 4,005,197 + AO356_17745 0.67 -0.3 4,005,197 + AO356_17745 0.67 +0.3 4,005,456 - -0.1 4,005,530 + -1.4 4,005,531 - +1.2 4,005,750 + -0.8 4,005,750 + -0.8 4,005,750 + +0.4 4,005,751 - +0.4 4,006,123 + AO356_17750 0.51 -0.6 4,006,124 - AO356_17750 0.51 -0.5 4,006,124 - AO356_17750 0.51 -0.6 4,006,124 - AO356_17750 0.51 -0.7 4,006,275 + AO356_17750 0.68 -0.0 4,006,275 + AO356_17750 0.68 -0.2 4,006,276 - AO356_17750 0.68 -1.0 4,006,276 - AO356_17750 0.68 -1.1 4,006,409 - AO356_17750 0.84 +0.9 4,006,585 + -0.4 4,006,585 + +0.5 4,006,586 - +0.3 4,006,586 - -0.5 4,006,586 - +0.8 4,006,586 - +0.3 4,006,586 - +0.2 4,006,586 - -0.1 4,006,588 + +0.3 4,006,633 + -0.4 4,006,634 - +0.7 4,006,685 + -1.3 4,006,730 + +0.3 4,006,730 + +0.1 4,006,730 + +0.5 4,006,731 - +0.3 4,006,731 - +0.2 4,006,731 - -0.0 4,006,742 + +0.5 4,006,742 + +0.9 4,006,743 - +0.3 4,006,805 - -0.1 4,006,828 - -0.5 4,006,910 + AO356_17755 0.12 -0.5 4,006,910 + AO356_17755 0.12 -0.5 4,006,910 + AO356_17755 0.12 +0.1 4,006,910 + AO356_17755 0.12 -0.6 4,006,910 + AO356_17755 0.12 -0.0 4,006,910 + AO356_17755 0.12 -0.7 4,006,911 - AO356_17755 0.12 +1.0 4,006,911 - AO356_17755 0.12 +0.1 4,006,911 - AO356_17755 0.12 +0.3 4,007,283 - AO356_17755 0.35 +0.4 4,007,545 + AO356_17755 0.51 +0.6 4,007,545 + AO356_17755 0.51 +0.9 4,007,553 + AO356_17755 0.52 -0.6
Or see this region's nucleotide sequence