Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14045 and AO356_14050 are separated by 197 nucleotides AO356_14050 and AO356_14055 are separated by 101 nucleotides
AO356_14045: AO356_14045 - hypothetical protein, at 3,187,446 to 3,188,819
_14045
AO356_14050: AO356_14050 - glutathione S-transferase, at 3,189,017 to 3,189,646
_14050
AO356_14055: AO356_14055 - hexuronate transporter, at 3,189,748 to 3,191,046
_14055
Position (kb)
3189
3190 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.346 kb on + strand, within AO356_14045 at 3188.346 kb on + strand, within AO356_14045 at 3188.347 kb on - strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.457 kb on + strand, within AO356_14045 at 3188.491 kb on - strand, within AO356_14045 at 3188.539 kb on - strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.647 kb on - strand, within AO356_14045 at 3188.647 kb on - strand, within AO356_14045 at 3188.658 kb on + strand, within AO356_14045 at 3188.658 kb on + strand, within AO356_14045 at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.683 kb on - strand at 3189.018 kb on + strand at 3189.018 kb on + strand at 3189.414 kb on + strand, within AO356_14050 at 3189.684 kb on + strand at 3190.010 kb on + strand, within AO356_14055 at 3190.010 kb on + strand, within AO356_14055 at 3190.010 kb on + strand, within AO356_14055 at 3190.010 kb on + strand, within AO356_14055 at 3190.011 kb on - strand, within AO356_14055 at 3190.073 kb on + strand, within AO356_14055 at 3190.096 kb on - strand, within AO356_14055 at 3190.096 kb on - strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.172 kb on + strand, within AO356_14055 at 3190.173 kb on - strand, within AO356_14055 at 3190.173 kb on - strand, within AO356_14055 at 3190.173 kb on - strand, within AO356_14055 at 3190.173 kb on - strand, within AO356_14055 at 3190.173 kb on - strand, within AO356_14055 at 3190.176 kb on + strand, within AO356_14055 at 3190.176 kb on + strand, within AO356_14055 at 3190.176 kb on + strand, within AO356_14055 at 3190.176 kb on + strand, within AO356_14055 at 3190.177 kb on - strand, within AO356_14055 at 3190.177 kb on - strand, within AO356_14055 at 3190.177 kb on - strand, within AO356_14055 at 3190.177 kb on - strand, within AO356_14055 at 3190.292 kb on + strand, within AO356_14055 at 3190.292 kb on + strand, within AO356_14055 at 3190.292 kb on + strand, within AO356_14055 at 3190.361 kb on + strand, within AO356_14055 at 3190.361 kb on + strand, within AO356_14055 at 3190.448 kb on + strand, within AO356_14055 at 3190.448 kb on + strand, within AO356_14055 at 3190.449 kb on - strand, within AO356_14055 at 3190.449 kb on - strand, within AO356_14055 at 3190.449 kb on - strand, within AO356_14055 at 3190.449 kb on - strand, within AO356_14055 at 3190.496 kb on + strand, within AO356_14055 at 3190.497 kb on - strand, within AO356_14055 at 3190.497 kb on - strand, within AO356_14055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 3,188,175 + AO356_14045 0.53 -0.5 3,188,175 + AO356_14045 0.53 -0.4 3,188,175 + AO356_14045 0.53 +0.4 3,188,175 + AO356_14045 0.53 -0.4 3,188,175 + AO356_14045 0.53 +0.8 3,188,175 + AO356_14045 0.53 +0.1 3,188,175 + AO356_14045 0.53 +0.2 3,188,175 + AO356_14045 0.53 +0.5 3,188,175 + AO356_14045 0.53 +0.1 3,188,175 + AO356_14045 0.53 -1.2 3,188,175 + AO356_14045 0.53 -1.2 3,188,176 - AO356_14045 0.53 +0.3 3,188,176 - AO356_14045 0.53 +0.2 3,188,176 - AO356_14045 0.53 +1.2 3,188,176 - AO356_14045 0.53 +0.7 3,188,176 - AO356_14045 0.53 -0.2 3,188,346 + AO356_14045 0.66 +0.4 3,188,346 + AO356_14045 0.66 -0.5 3,188,347 - AO356_14045 0.66 +0.8 3,188,373 + AO356_14045 0.67 +0.9 3,188,373 + AO356_14045 0.67 +0.7 3,188,373 + AO356_14045 0.67 +0.2 3,188,373 + AO356_14045 0.67 -0.5 3,188,373 + AO356_14045 0.67 -0.2 3,188,373 + AO356_14045 0.67 -0.3 3,188,374 - AO356_14045 0.68 -0.3 3,188,374 - AO356_14045 0.68 +0.8 3,188,374 - AO356_14045 0.68 +1.2 3,188,457 + AO356_14045 0.74 +0.8 3,188,491 - AO356_14045 0.76 +0.6 3,188,539 - AO356_14045 0.80 +0.1 3,188,580 + AO356_14045 0.83 +0.2 3,188,580 + AO356_14045 0.83 -0.8 3,188,580 + AO356_14045 0.83 -0.8 3,188,581 - AO356_14045 0.83 -0.7 3,188,581 - AO356_14045 0.83 +0.7 3,188,581 - AO356_14045 0.83 -2.8 3,188,581 - AO356_14045 0.83 -0.6 3,188,581 - AO356_14045 0.83 -0.4 3,188,646 + AO356_14045 0.87 +1.2 3,188,646 + AO356_14045 0.87 +0.3 3,188,646 + AO356_14045 0.87 -0.4 3,188,647 - AO356_14045 0.87 -0.4 3,188,647 - AO356_14045 0.87 -0.7 3,188,658 + AO356_14045 0.88 -1.3 3,188,658 + AO356_14045 0.88 +0.4 3,188,682 + +0.1 3,188,682 + +0.6 3,188,682 + +0.4 3,188,682 + +0.3 3,188,683 - -0.7 3,189,018 + +1.0 3,189,018 + -0.5 3,189,414 + AO356_14050 0.63 -1.5 3,189,684 + +0.1 3,190,010 + AO356_14055 0.20 -0.5 3,190,010 + AO356_14055 0.20 +0.4 3,190,010 + AO356_14055 0.20 +0.9 3,190,010 + AO356_14055 0.20 +0.1 3,190,011 - AO356_14055 0.20 -0.6 3,190,073 + AO356_14055 0.25 +0.3 3,190,096 - AO356_14055 0.27 +0.5 3,190,096 - AO356_14055 0.27 +0.2 3,190,172 + AO356_14055 0.33 -0.2 3,190,172 + AO356_14055 0.33 -0.2 3,190,172 + AO356_14055 0.33 -0.4 3,190,172 + AO356_14055 0.33 +1.2 3,190,172 + AO356_14055 0.33 +0.7 3,190,172 + AO356_14055 0.33 +0.5 3,190,173 - AO356_14055 0.33 -0.4 3,190,173 - AO356_14055 0.33 +0.1 3,190,173 - AO356_14055 0.33 +0.6 3,190,173 - AO356_14055 0.33 +0.4 3,190,173 - AO356_14055 0.33 -0.2 3,190,176 + AO356_14055 0.33 +0.3 3,190,176 + AO356_14055 0.33 -0.4 3,190,176 + AO356_14055 0.33 +1.3 3,190,176 + AO356_14055 0.33 -1.8 3,190,177 - AO356_14055 0.33 +0.5 3,190,177 - AO356_14055 0.33 +0.3 3,190,177 - AO356_14055 0.33 +0.3 3,190,177 - AO356_14055 0.33 +0.8 3,190,292 + AO356_14055 0.42 +0.4 3,190,292 + AO356_14055 0.42 -0.1 3,190,292 + AO356_14055 0.42 +1.4 3,190,361 + AO356_14055 0.47 +1.1 3,190,361 + AO356_14055 0.47 +0.3 3,190,448 + AO356_14055 0.54 +0.6 3,190,448 + AO356_14055 0.54 -0.6 3,190,449 - AO356_14055 0.54 -0.7 3,190,449 - AO356_14055 0.54 +0.3 3,190,449 - AO356_14055 0.54 +0.9 3,190,449 - AO356_14055 0.54 +0.1 3,190,496 + AO356_14055 0.58 -0.2 3,190,497 - AO356_14055 0.58 +0.3 3,190,497 - AO356_14055 0.58 -0.1
Or see this region's nucleotide sequence