Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07515

Experiment: D-Cycloserine 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07510 and AO356_07515 are separated by 75 nucleotidesAO356_07515 and AO356_07520 are separated by 97 nucleotidesAO356_07520 and AO356_07525 are separated by 59 nucleotidesAO356_07525 and AO356_07530 overlap by 4 nucleotides AO356_07510: AO356_07510 - DNA repair protein RecN, at 1,663,384 to 1,665,057 _07510 AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537 _07515 AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162 _07520 AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524 _07525 AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964 _07530 Position (kb) 1665 1666Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1664.281 kb on + strand, within AO356_07510at 1664.282 kb on - strand, within AO356_07510at 1664.282 kb on - strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.310 kb on + strand, within AO356_07510at 1664.311 kb on - strand, within AO356_07510at 1664.311 kb on - strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.453 kb on - strand, within AO356_07510at 1664.453 kb on - strand, within AO356_07510at 1664.756 kb on + strand, within AO356_07510at 1664.756 kb on + strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.894 kb on + strandat 1664.894 kb on + strandat 1664.895 kb on - strandat 1665.134 kb on + strandat 1665.134 kb on + strandat 1665.135 kb on - strandat 1665.135 kb on - strandat 1665.135 kb on - strandat 1666.160 kb on + strandat 1666.224 kb on - strandat 1666.502 kb on + strandat 1666.502 kb on + strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
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1,664,281 + AO356_07510 0.54 -0.2
1,664,282 - AO356_07510 0.54 -0.5
1,664,282 - AO356_07510 0.54 +0.6
1,664,308 + AO356_07510 0.55 -1.3
1,664,308 + AO356_07510 0.55 +0.6
1,664,308 + AO356_07510 0.55 +0.6
1,664,308 + AO356_07510 0.55 +0.0
1,664,308 + AO356_07510 0.55 -1.7
1,664,308 + AO356_07510 0.55 +0.3
1,664,308 + AO356_07510 0.55 -1.2
1,664,308 + AO356_07510 0.55 -0.8
1,664,308 + AO356_07510 0.55 +0.2
1,664,308 + AO356_07510 0.55 -0.7
1,664,308 + AO356_07510 0.55 -1.4
1,664,308 + AO356_07510 0.55 -0.2
1,664,308 + AO356_07510 0.55 -0.6
1,664,308 + AO356_07510 0.55 -1.7
1,664,308 + AO356_07510 0.55 +1.3
1,664,308 + AO356_07510 0.55 +0.1
1,664,308 + AO356_07510 0.55 +0.1
1,664,308 + AO356_07510 0.55 +0.5
1,664,308 + AO356_07510 0.55 -2.3
1,664,309 - AO356_07510 0.55 -2.4
1,664,309 - AO356_07510 0.55 -0.2
1,664,309 - AO356_07510 0.55 -0.5
1,664,309 - AO356_07510 0.55 +0.4
1,664,309 - AO356_07510 0.55 +0.2
1,664,309 - AO356_07510 0.55 -1.0
1,664,309 - AO356_07510 0.55 -0.2
1,664,309 - AO356_07510 0.55 -0.7
1,664,309 - AO356_07510 0.55 +0.1
1,664,309 - AO356_07510 0.55 -0.3
1,664,309 - AO356_07510 0.55 -1.0
1,664,309 - AO356_07510 0.55 -0.7
1,664,309 - AO356_07510 0.55 -1.0
1,664,309 - AO356_07510 0.55 -0.4
1,664,309 - AO356_07510 0.55 +0.5
1,664,309 - AO356_07510 0.55 +0.3
1,664,309 - AO356_07510 0.55 -0.2
1,664,309 - AO356_07510 0.55 -0.6
1,664,310 + AO356_07510 0.55 -2.4
1,664,311 - AO356_07510 0.55 -0.9
1,664,311 - AO356_07510 0.55 -0.1
1,664,440 + AO356_07510 0.63 -1.0
1,664,440 + AO356_07510 0.63 +0.2
1,664,440 + AO356_07510 0.63 -2.2
1,664,440 + AO356_07510 0.63 +0.9
1,664,440 + AO356_07510 0.63 +0.1
1,664,440 + AO356_07510 0.63 -1.1
1,664,440 + AO356_07510 0.63 +0.0
1,664,440 + AO356_07510 0.63 -0.3
1,664,440 + AO356_07510 0.63 -0.7
1,664,441 - AO356_07510 0.63 +0.1
1,664,441 - AO356_07510 0.63 -1.7
1,664,441 - AO356_07510 0.63 -0.5
1,664,441 - AO356_07510 0.63 -0.4
1,664,441 - AO356_07510 0.63 +0.6
1,664,441 - AO356_07510 0.63 +1.3
1,664,441 - AO356_07510 0.63 -0.9
1,664,441 - AO356_07510 0.63 -0.4
1,664,441 - AO356_07510 0.63 +0.9
1,664,453 - AO356_07510 0.64 -0.6
1,664,453 - AO356_07510 0.64 -1.6
1,664,756 + AO356_07510 0.82 -1.0
1,664,756 + AO356_07510 0.82 +0.1
1,664,757 - AO356_07510 0.82 -0.3
1,664,757 - AO356_07510 0.82 +0.5
1,664,894 + -0.8
1,664,894 + -2.8
1,664,895 - +0.4
1,665,134 + -0.6
1,665,134 + -0.7
1,665,135 - -0.4
1,665,135 - -0.5
1,665,135 - +1.0
1,666,160 + -0.4
1,666,224 - -0.0
1,666,502 + -0.4
1,666,502 + +0.6
1,666,503 - +0.7
1,666,503 - +1.6
1,666,503 - -0.2
1,666,514 - +1.4
1,666,514 - +0.3
1,666,514 - +1.8

Or see this region's nucleotide sequence