Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03880 and AO356_03885 are separated by 274 nucleotides AO356_03885 and AO356_03890 are separated by 330 nucleotides
AO356_03880: AO356_03880 - flagellin, at 857,838 to 858,686
_03880
AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887
_03885
AO356_03890: AO356_03890 - glycosyl transferase family 2, at 860,218 to 863,112
_03890
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 857.964 kb on + strand, within AO356_03880 at 857.965 kb on - strand, within AO356_03880 at 858.128 kb on + strand, within AO356_03880 at 858.128 kb on + strand, within AO356_03880 at 858.129 kb on - strand, within AO356_03880 at 858.359 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.474 kb on - strand, within AO356_03880 at 858.665 kb on + strand at 858.665 kb on + strand at 858.665 kb on + strand at 858.665 kb on + strand at 858.672 kb on + strand at 858.672 kb on + strand at 858.678 kb on + strand at 858.749 kb on - strand at 858.761 kb on + strand at 858.761 kb on + strand at 858.762 kb on - strand at 858.762 kb on - strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.769 kb on - strand at 859.086 kb on + strand, within AO356_03885 at 859.087 kb on - strand, within AO356_03885 at 859.250 kb on - strand, within AO356_03885 at 859.523 kb on + strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.832 kb on + strand at 859.832 kb on + strand at 859.832 kb on + strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.836 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.877 kb on - strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.013 kb on + strand at 860.013 kb on + strand at 860.014 kb on - strand at 860.018 kb on + strand at 860.018 kb on + strand at 860.019 kb on - strand at 860.019 kb on - strand at 860.036 kb on + strand at 860.037 kb on - strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.044 kb on - strand at 860.044 kb on - strand at 860.091 kb on + strand at 860.092 kb on - strand at 860.116 kb on + strand at 860.180 kb on + strand at 860.181 kb on - strand at 860.220 kb on - strand at 860.242 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.301 kb on - strand at 860.301 kb on - strand at 860.421 kb on - strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.582 kb on + strand, within AO356_03890 at 860.582 kb on + strand, within AO356_03890 at 860.583 kb on - strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 857,964 + AO356_03880 0.15 +0.2 857,965 - AO356_03880 0.15 -0.1 858,128 + AO356_03880 0.34 +0.4 858,128 + AO356_03880 0.34 -0.2 858,129 - AO356_03880 0.34 -0.4 858,359 + AO356_03880 0.61 +0.0 858,413 + AO356_03880 0.68 -0.2 858,413 + AO356_03880 0.68 -0.0 858,413 + AO356_03880 0.68 +0.1 858,413 + AO356_03880 0.68 -1.2 858,413 + AO356_03880 0.68 +1.5 858,414 - AO356_03880 0.68 +0.4 858,414 - AO356_03880 0.68 +0.3 858,414 - AO356_03880 0.68 -0.2 858,414 - AO356_03880 0.68 +0.3 858,414 - AO356_03880 0.68 -0.3 858,474 - AO356_03880 0.75 +0.9 858,665 + -0.9 858,665 + +0.4 858,665 + -0.5 858,665 + -0.9 858,672 + +0.9 858,672 + -0.3 858,678 + +0.8 858,749 - +0.8 858,761 + -0.8 858,761 + +0.4 858,762 - +0.6 858,762 - +0.5 858,764 + -0.2 858,764 + +0.5 858,764 + -0.1 858,764 + +0.1 858,764 + +1.6 858,764 + -0.0 858,764 + -0.2 858,765 - +0.9 858,765 - -0.5 858,765 - -0.6 858,765 - -0.2 858,765 - -0.2 858,768 + -0.2 858,768 + +0.0 858,768 + +0.3 858,768 + -0.8 858,768 + +0.2 858,769 - -1.0 859,086 + AO356_03885 0.13 +0.2 859,087 - AO356_03885 0.14 +1.5 859,250 - AO356_03885 0.31 -0.9 859,523 + AO356_03885 0.61 -0.5 859,524 - AO356_03885 0.61 -1.7 859,524 - AO356_03885 0.61 -0.8 859,524 - AO356_03885 0.61 -1.0 859,524 - AO356_03885 0.61 -0.8 859,524 - AO356_03885 0.61 -1.4 859,534 + AO356_03885 0.62 -0.5 859,534 + AO356_03885 0.62 -1.0 859,534 + AO356_03885 0.62 -2.0 859,534 + AO356_03885 0.62 +1.3 859,534 + AO356_03885 0.62 -0.7 859,534 + AO356_03885 0.62 -0.1 859,534 + AO356_03885 0.62 -0.7 859,534 + AO356_03885 0.62 +0.3 859,534 + AO356_03885 0.62 -0.1 859,534 + AO356_03885 0.62 -0.5 859,534 + AO356_03885 0.62 -0.5 859,535 - AO356_03885 0.62 -0.3 859,535 - AO356_03885 0.62 -0.5 859,535 - AO356_03885 0.62 -0.6 859,535 - AO356_03885 0.62 +0.1 859,535 - AO356_03885 0.62 -1.2 859,535 - AO356_03885 0.62 -0.8 859,538 + AO356_03885 0.62 -1.1 859,538 + AO356_03885 0.62 -0.7 859,539 - AO356_03885 0.62 +0.9 859,539 - AO356_03885 0.62 -1.0 859,539 - AO356_03885 0.62 -0.5 859,558 + AO356_03885 0.64 -0.1 859,558 + AO356_03885 0.64 -0.8 859,559 - AO356_03885 0.65 -0.8 859,559 - AO356_03885 0.65 -0.7 859,559 - AO356_03885 0.65 -1.0 859,559 - AO356_03885 0.65 +0.3 859,560 + AO356_03885 0.65 -0.6 859,560 + AO356_03885 0.65 -0.8 859,832 + -0.6 859,832 + -0.7 859,832 + +0.2 859,833 - -1.5 859,833 - -0.5 859,833 - +0.1 859,833 - -2.9 859,836 + -0.1 859,859 + -0.5 859,859 + +0.1 859,859 + -0.1 859,859 + -0.3 859,859 + -0.3 859,859 + -0.6 859,860 - -1.0 859,860 - -0.7 859,860 - +0.1 859,860 - -0.7 859,860 - -0.3 859,877 - -0.8 859,915 + -2.3 859,916 - -0.1 859,916 - +1.1 859,916 - -0.2 860,013 + -0.8 860,013 + +0.0 860,014 - -0.5 860,018 + -0.5 860,018 + +0.1 860,019 - -0.3 860,019 - -0.6 860,036 + -0.2 860,037 - +0.1 860,043 + -1.6 860,043 + -0.2 860,043 + -0.3 860,043 + -0.5 860,043 + -1.6 860,043 + -0.5 860,043 + -0.4 860,043 + +0.0 860,044 - -0.1 860,044 - +0.1 860,091 + -0.5 860,092 - -0.8 860,116 + -0.1 860,180 + -0.6 860,181 - +0.3 860,220 - +0.2 860,242 + -1.4 860,300 + -0.2 860,300 + +0.9 860,300 + +0.5 860,300 + +0.3 860,300 + +1.3 860,301 - +0.2 860,301 - +0.9 860,421 - +0.1 860,488 + -1.5 860,488 + -0.4 860,488 + +1.2 860,488 + -2.1 860,489 - +0.5 860,489 - -0.2 860,489 - +0.1 860,489 - +0.2 860,582 + AO356_03890 0.13 -0.4 860,582 + AO356_03890 0.13 -1.7 860,583 - AO356_03890 0.13 +0.2 860,664 + AO356_03890 0.15 +0.6 860,664 + AO356_03890 0.15 -0.5 860,664 + AO356_03890 0.15 -0.2 860,665 - AO356_03890 0.15 -0.4 860,665 - AO356_03890 0.15 +1.3 860,665 - AO356_03890 0.15 +0.7 860,665 - AO356_03890 0.15 -0.4 860,665 - AO356_03890 0.15 +1.1 860,665 - AO356_03890 0.15 +0.4 860,790 - AO356_03890 0.20 +0.5 860,790 - AO356_03890 0.20 -0.3
Or see this region's nucleotide sequence