Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02500 and AO356_02505 are separated by 275 nucleotides AO356_02505 and AO356_02510 are separated by 64 nucleotides
AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334
_02500
AO356_02505: AO356_02505 - nucleoid-associated protein, at 543,610 to 543,948
_02505
AO356_02510: AO356_02510 - DNA polymerase III subunit gamma/tau, at 544,013 to 546,088
_02510
Position (kb) 543
544 Strain fitness (log2 ratio) -1
0
1 at 542.670 kb on + strand, within AO356_02500 at 542.670 kb on + strand, within AO356_02500 at 542.670 kb on + strand, within AO356_02500 at 542.671 kb on - strand, within AO356_02500 at 542.671 kb on - strand, within AO356_02500 at 542.675 kb on - strand, within AO356_02500 at 542.675 kb on - strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.769 kb on + strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.770 kb on - strand, within AO356_02500 at 542.922 kb on + strand, within AO356_02500 at 542.922 kb on + strand, within AO356_02500 at 542.922 kb on + strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 542.923 kb on - strand, within AO356_02500 at 543.144 kb on + strand, within AO356_02500 at 543.144 kb on + strand, within AO356_02500 at 543.145 kb on - strand, within AO356_02500 at 543.145 kb on - strand, within AO356_02500 at 543.177 kb on + strand, within AO356_02500 at 543.178 kb on - strand, within AO356_02500 at 543.366 kb on + strand at 543.366 kb on + strand at 543.366 kb on + strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.368 kb on + strand at 543.368 kb on + strand at 543.369 kb on - strand at 543.369 kb on - strand at 543.369 kb on - strand at 543.447 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.523 kb on + strand at 543.524 kb on - strand at 543.539 kb on + strand at 543.584 kb on + strand at 543.585 kb on - strand at 543.585 kb on - strand at 543.585 kb on - strand at 544.014 kb on + strand at 544.014 kb on + strand at 544.014 kb on + strand at 544.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 542,670 + AO356_02500 0.36 -1.5 542,670 + AO356_02500 0.36 +0.4 542,670 + AO356_02500 0.36 -0.7 542,671 - AO356_02500 0.36 +0.2 542,671 - AO356_02500 0.36 +0.1 542,675 - AO356_02500 0.36 +1.0 542,675 - AO356_02500 0.36 +0.4 542,769 + AO356_02500 0.45 +0.2 542,769 + AO356_02500 0.45 -0.1 542,769 + AO356_02500 0.45 -0.1 542,769 + AO356_02500 0.45 -0.1 542,769 + AO356_02500 0.45 -0.2 542,769 + AO356_02500 0.45 +0.4 542,770 - AO356_02500 0.45 -1.4 542,770 - AO356_02500 0.45 +0.3 542,770 - AO356_02500 0.45 -0.5 542,770 - AO356_02500 0.45 +0.4 542,770 - AO356_02500 0.45 +0.1 542,770 - AO356_02500 0.45 +0.3 542,770 - AO356_02500 0.45 +0.8 542,770 - AO356_02500 0.45 +0.0 542,922 + AO356_02500 0.60 -0.2 542,922 + AO356_02500 0.60 +1.0 542,922 + AO356_02500 0.60 -0.4 542,923 - AO356_02500 0.60 -0.3 542,923 - AO356_02500 0.60 -0.1 542,923 - AO356_02500 0.60 +0.0 542,923 - AO356_02500 0.60 -0.3 542,923 - AO356_02500 0.60 -0.7 542,923 - AO356_02500 0.60 +0.2 543,144 + AO356_02500 0.82 -0.1 543,144 + AO356_02500 0.82 -0.3 543,145 - AO356_02500 0.82 -0.5 543,145 - AO356_02500 0.82 -0.0 543,177 + AO356_02500 0.85 +0.5 543,178 - AO356_02500 0.85 +0.8 543,366 + +0.5 543,366 + -0.6 543,366 + -0.2 543,367 - -0.8 543,367 - -0.1 543,367 - +0.6 543,367 - -1.0 543,367 - -0.4 543,367 - -1.0 543,367 - -0.3 543,367 - +1.5 543,367 - +1.0 543,367 - +0.5 543,368 + +0.1 543,368 + -0.8 543,369 - +0.2 543,369 - +0.7 543,369 - -0.8 543,447 + -0.2 543,514 + -0.3 543,514 + -0.0 543,514 + +0.4 543,514 + -0.2 543,523 + -0.3 543,524 - +0.3 543,539 + -0.3 543,584 + -0.0 543,585 - +0.3 543,585 - -0.1 543,585 - +0.1 544,014 + +0.1 544,014 + +0.4 544,014 + -0.0 544,015 - +1.1
Or see this region's nucleotide sequence