Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02495

Experiment: D-Cycloserine 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02485 and AO356_02490 are separated by 76 nucleotidesAO356_02490 and AO356_02495 are separated by 126 nucleotidesAO356_02495 and AO356_02500 are separated by 66 nucleotides AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879 _02485 AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504 _02490 AO356_02495: AO356_02495 - recombination protein RecR, at 541,631 to 542,233 _02495 AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334 _02500 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.736 kb on + strand, within AO356_02485at 540.793 kb on + strand, within AO356_02485at 540.918 kb on + strandat 540.918 kb on + strandat 540.918 kb on + strandat 540.918 kb on + strandat 540.918 kb on + strandat 540.919 kb on - strandat 540.919 kb on - strandat 541.100 kb on + strand, within AO356_02490at 541.100 kb on + strand, within AO356_02490at 541.101 kb on - strand, within AO356_02490at 541.173 kb on - strand, within AO356_02490at 541.230 kb on + strand, within AO356_02490at 541.230 kb on + strand, within AO356_02490at 541.230 kb on + strand, within AO356_02490at 541.231 kb on - strand, within AO356_02490at 541.231 kb on - strand, within AO356_02490at 541.502 kb on + strandat 541.502 kb on + strandat 541.557 kb on + strandat 541.632 kb on + strandat 541.770 kb on + strand, within AO356_02495at 541.770 kb on + strand, within AO356_02495at 541.771 kb on - strand, within AO356_02495at 541.927 kb on - strand, within AO356_02495at 541.959 kb on + strand, within AO356_02495at 541.959 kb on + strand, within AO356_02495at 541.959 kb on + strand, within AO356_02495at 541.959 kb on + strand, within AO356_02495at 541.959 kb on + strand, within AO356_02495at 541.960 kb on - strand, within AO356_02495at 542.057 kb on + strand, within AO356_02495at 542.057 kb on + strand, within AO356_02495at 542.072 kb on + strand, within AO356_02495at 542.073 kb on - strand, within AO356_02495at 542.073 kb on - strand, within AO356_02495at 542.251 kb on + strandat 542.251 kb on + strandat 542.251 kb on + strandat 542.251 kb on + strandat 542.252 kb on - strandat 542.252 kb on - strandat 542.252 kb on - strandat 542.270 kb on - strandat 542.270 kb on - strandat 542.270 kb on - strandat 542.297 kb on + strandat 542.297 kb on + strandat 542.298 kb on - strandat 542.360 kb on - strandat 542.488 kb on + strand, within AO356_02500at 542.577 kb on + strand, within AO356_02500at 542.577 kb on + strand, within AO356_02500at 542.577 kb on + strand, within AO356_02500at 542.578 kb on - strand, within AO356_02500at 542.670 kb on + strand, within AO356_02500at 542.670 kb on + strand, within AO356_02500at 542.670 kb on + strand, within AO356_02500at 542.671 kb on - strand, within AO356_02500at 542.671 kb on - strand, within AO356_02500at 542.675 kb on - strand, within AO356_02500at 542.675 kb on - strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 543.144 kb on + strand, within AO356_02500at 543.144 kb on + strand, within AO356_02500at 543.145 kb on - strand, within AO356_02500at 543.145 kb on - strand, within AO356_02500at 543.177 kb on + strand, within AO356_02500at 543.178 kb on - strand, within AO356_02500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
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540,736 + AO356_02485 0.80 -1.1
540,793 + AO356_02485 0.88 -1.0
540,918 + +1.2
540,918 + +0.0
540,918 + +0.3
540,918 + +0.3
540,918 + -0.1
540,919 - +0.9
540,919 - -0.9
541,100 + AO356_02490 0.26 +0.3
541,100 + AO356_02490 0.26 +0.1
541,101 - AO356_02490 0.26 -0.5
541,173 - AO356_02490 0.40 +0.8
541,230 + AO356_02490 0.50 -0.1
541,230 + AO356_02490 0.50 -0.0
541,230 + AO356_02490 0.50 -0.1
541,231 - AO356_02490 0.50 +1.0
541,231 - AO356_02490 0.50 +0.2
541,502 + -0.5
541,502 + -2.1
541,557 + -0.9
541,632 + +1.2
541,770 + AO356_02495 0.23 -1.8
541,770 + AO356_02495 0.23 -1.9
541,771 - AO356_02495 0.23 -0.6
541,927 - AO356_02495 0.49 -0.7
541,959 + AO356_02495 0.54 -0.6
541,959 + AO356_02495 0.54 -1.4
541,959 + AO356_02495 0.54 -0.4
541,959 + AO356_02495 0.54 -1.4
541,959 + AO356_02495 0.54 -3.4
541,960 - AO356_02495 0.55 +0.0
542,057 + AO356_02495 0.71 -0.9
542,057 + AO356_02495 0.71 -1.6
542,072 + AO356_02495 0.73 -2.1
542,073 - AO356_02495 0.73 -1.6
542,073 - AO356_02495 0.73 -0.6
542,251 + -1.4
542,251 + +0.4
542,251 + -2.3
542,251 + -1.2
542,252 - +0.9
542,252 - -0.1
542,252 - -0.6
542,270 - +0.5
542,270 - -0.1
542,270 - +0.6
542,297 + -0.5
542,297 + -0.0
542,298 - +0.4
542,360 - +0.2
542,488 + AO356_02500 0.18 +0.3
542,577 + AO356_02500 0.27 -0.0
542,577 + AO356_02500 0.27 -0.1
542,577 + AO356_02500 0.27 +0.7
542,578 - AO356_02500 0.27 +0.5
542,670 + AO356_02500 0.36 -1.5
542,670 + AO356_02500 0.36 +0.4
542,670 + AO356_02500 0.36 -0.7
542,671 - AO356_02500 0.36 +0.2
542,671 - AO356_02500 0.36 +0.1
542,675 - AO356_02500 0.36 +1.0
542,675 - AO356_02500 0.36 +0.4
542,769 + AO356_02500 0.45 +0.2
542,769 + AO356_02500 0.45 -0.1
542,769 + AO356_02500 0.45 -0.1
542,769 + AO356_02500 0.45 -0.1
542,769 + AO356_02500 0.45 -0.2
542,769 + AO356_02500 0.45 +0.4
542,770 - AO356_02500 0.45 -1.4
542,770 - AO356_02500 0.45 +0.3
542,770 - AO356_02500 0.45 -0.5
542,770 - AO356_02500 0.45 +0.4
542,770 - AO356_02500 0.45 +0.1
542,770 - AO356_02500 0.45 +0.3
542,770 - AO356_02500 0.45 +0.8
542,770 - AO356_02500 0.45 +0.0
542,922 + AO356_02500 0.60 -0.2
542,922 + AO356_02500 0.60 +1.0
542,922 + AO356_02500 0.60 -0.4
542,923 - AO356_02500 0.60 -0.3
542,923 - AO356_02500 0.60 -0.1
542,923 - AO356_02500 0.60 +0.0
542,923 - AO356_02500 0.60 -0.3
542,923 - AO356_02500 0.60 -0.7
542,923 - AO356_02500 0.60 +0.2
543,144 + AO356_02500 0.82 -0.1
543,144 + AO356_02500 0.82 -0.3
543,145 - AO356_02500 0.82 -0.5
543,145 - AO356_02500 0.82 -0.0
543,177 + AO356_02500 0.85 +0.5
543,178 - AO356_02500 0.85 +0.8

Or see this region's nucleotide sequence