Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02480 and AO356_02485 are separated by 94 nucleotides AO356_02485 and AO356_02490 are separated by 76 nucleotides AO356_02490 and AO356_02495 are separated by 126 nucleotides
AO356_02480: AO356_02480 - coproporphyrinogen III oxidase, at 538,668 to 540,050
_02480
AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879
_02485
AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504
_02490
AO356_02495: AO356_02495 - recombination protein RecR, at 541,631 to 542,233
_02495
Position (kb) 540
541 Strain fitness (log2 ratio) -2
-1
0
1 at 539.313 kb on + strand, within AO356_02480 at 539.314 kb on - strand, within AO356_02480 at 539.404 kb on - strand, within AO356_02480 at 539.404 kb on - strand, within AO356_02480 at 539.529 kb on + strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.616 kb on + strand, within AO356_02480 at 539.616 kb on + strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.685 kb on + strand, within AO356_02480 at 539.685 kb on + strand, within AO356_02480 at 539.716 kb on - strand, within AO356_02480 at 539.874 kb on + strand, within AO356_02480 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.044 kb on + strand at 540.093 kb on - strand at 540.115 kb on + strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.366 kb on + strand, within AO356_02485 at 540.367 kb on - strand, within AO356_02485 at 540.530 kb on + strand, within AO356_02485 at 540.531 kb on - strand, within AO356_02485 at 540.606 kb on - strand, within AO356_02485 at 540.736 kb on + strand, within AO356_02485 at 540.793 kb on + strand, within AO356_02485 at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.919 kb on - strand at 540.919 kb on - strand at 541.100 kb on + strand, within AO356_02490 at 541.100 kb on + strand, within AO356_02490 at 541.101 kb on - strand, within AO356_02490 at 541.173 kb on - strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.502 kb on + strand at 541.502 kb on + strand at 541.557 kb on + strand at 541.632 kb on + strand at 541.770 kb on + strand, within AO356_02495 at 541.770 kb on + strand, within AO356_02495 at 541.771 kb on - strand, within AO356_02495
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 539,313 + AO356_02480 0.47 +0.1 539,314 - AO356_02480 0.47 -0.5 539,404 - AO356_02480 0.53 +0.5 539,404 - AO356_02480 0.53 +0.0 539,529 + AO356_02480 0.62 +0.1 539,530 - AO356_02480 0.62 +0.4 539,530 - AO356_02480 0.62 +0.1 539,530 - AO356_02480 0.62 +0.4 539,616 + AO356_02480 0.69 +0.4 539,616 + AO356_02480 0.69 +0.1 539,617 - AO356_02480 0.69 +0.8 539,617 - AO356_02480 0.69 -0.9 539,617 - AO356_02480 0.69 +0.4 539,617 - AO356_02480 0.69 -0.7 539,685 + AO356_02480 0.74 +0.1 539,685 + AO356_02480 0.74 -0.3 539,716 - AO356_02480 0.76 +0.5 539,874 + AO356_02480 0.87 -0.1 540,006 + -0.7 540,006 + -0.9 540,006 + -0.5 540,007 - -0.1 540,007 - +0.3 540,007 - +0.0 540,044 + -0.2 540,093 - +0.2 540,115 + +1.3 540,116 - -0.2 540,116 - -0.6 540,116 - +0.2 540,116 - -2.3 540,366 + AO356_02485 0.30 -0.3 540,367 - AO356_02485 0.30 -0.2 540,530 + AO356_02485 0.52 -0.6 540,531 - AO356_02485 0.53 +0.8 540,606 - AO356_02485 0.63 -1.1 540,736 + AO356_02485 0.80 -1.1 540,793 + AO356_02485 0.88 -1.0 540,918 + +1.2 540,918 + +0.0 540,918 + +0.3 540,918 + +0.3 540,918 + -0.1 540,919 - +0.9 540,919 - -0.9 541,100 + AO356_02490 0.26 +0.3 541,100 + AO356_02490 0.26 +0.1 541,101 - AO356_02490 0.26 -0.5 541,173 - AO356_02490 0.40 +0.8 541,230 + AO356_02490 0.50 -0.1 541,230 + AO356_02490 0.50 -0.0 541,230 + AO356_02490 0.50 -0.1 541,231 - AO356_02490 0.50 +1.0 541,231 - AO356_02490 0.50 +0.2 541,502 + -0.5 541,502 + -2.1 541,557 + -0.9 541,632 + +1.2 541,770 + AO356_02495 0.23 -1.8 541,770 + AO356_02495 0.23 -1.9 541,771 - AO356_02495 0.23 -0.6
Or see this region's nucleotide sequence