Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02095 and AO356_02100 are separated by 11 nucleotides AO356_02100 and AO356_02105 are separated by 84 nucleotides AO356_02105 and AO356_02110 are separated by 29 nucleotides AO356_02110 and AO356_02115 overlap by 4 nucleotides AO356_02115 and AO356_02120 overlap by 4 nucleotides AO356_02120 and AO356_02125 are separated by 75 nucleotides
AO356_02095: AO356_02095 - hypothetical protein, at 458,292 to 458,636
_02095
AO356_02100: AO356_02100 - hypothetical protein, at 458,648 to 458,968
_02100
AO356_02105: AO356_02105 - hypothetical protein, at 459,053 to 459,265
_02105
AO356_02110: AO356_02110 - hypothetical protein, at 459,295 to 459,768
_02110
AO356_02115: AO356_02115 - transcriptional regulator, at 459,765 to 460,055
_02115
AO356_02120: AO356_02120 - hypothetical protein, at 460,052 to 460,423
_02120
AO356_02125: AO356_02125 - hypothetical protein, at 460,499 to 460,732
_02125
Position (kb) 459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 458.338 kb on + strand, within AO356_02095 at 458.339 kb on - strand, within AO356_02095 at 458.429 kb on + strand, within AO356_02095 at 458.443 kb on + strand, within AO356_02095 at 458.443 kb on + strand, within AO356_02095 at 458.444 kb on - strand, within AO356_02095 at 458.520 kb on - strand, within AO356_02095 at 459.053 kb on - strand at 459.053 kb on - strand at 459.171 kb on - strand, within AO356_02105 at 459.171 kb on - strand, within AO356_02105 at 459.282 kb on - strand at 459.330 kb on - strand at 459.330 kb on - strand at 459.330 kb on - strand at 459.330 kb on - strand at 459.371 kb on - strand, within AO356_02110 at 459.412 kb on - strand, within AO356_02110 at 459.460 kb on - strand, within AO356_02110 at 459.460 kb on - strand, within AO356_02110 at 459.460 kb on - strand, within AO356_02110 at 459.460 kb on - strand, within AO356_02110 at 459.487 kb on - strand, within AO356_02110 at 459.487 kb on - strand, within AO356_02110 at 459.494 kb on - strand, within AO356_02110 at 459.506 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.521 kb on - strand, within AO356_02110 at 459.701 kb on - strand, within AO356_02110 at 459.701 kb on - strand, within AO356_02110 at 459.701 kb on - strand, within AO356_02110 at 459.729 kb on - strand at 459.980 kb on - strand, within AO356_02115 at 460.369 kb on - strand, within AO356_02120 at 460.433 kb on - strand at 460.639 kb on - strand, within AO356_02125 at 460.639 kb on - strand, within AO356_02125 at 460.706 kb on - strand, within AO356_02125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 458,338 + AO356_02095 0.13 +0.9 458,339 - AO356_02095 0.14 -2.0 458,429 + AO356_02095 0.40 +0.1 458,443 + AO356_02095 0.44 +0.2 458,443 + AO356_02095 0.44 +1.0 458,444 - AO356_02095 0.44 +0.1 458,520 - AO356_02095 0.66 +0.8 459,053 - +0.9 459,053 - +0.6 459,171 - AO356_02105 0.55 -0.9 459,171 - AO356_02105 0.55 +0.5 459,282 - +1.3 459,330 - +0.2 459,330 - +0.4 459,330 - -1.3 459,330 - +0.4 459,371 - AO356_02110 0.16 +0.1 459,412 - AO356_02110 0.25 -0.4 459,460 - AO356_02110 0.35 +0.6 459,460 - AO356_02110 0.35 +0.7 459,460 - AO356_02110 0.35 -0.4 459,460 - AO356_02110 0.35 +0.1 459,487 - AO356_02110 0.41 -0.8 459,487 - AO356_02110 0.41 -0.5 459,494 - AO356_02110 0.42 +0.5 459,506 - AO356_02110 0.45 -0.4 459,521 - AO356_02110 0.48 +0.1 459,521 - AO356_02110 0.48 +1.3 459,521 - AO356_02110 0.48 +1.4 459,521 - AO356_02110 0.48 +0.5 459,521 - AO356_02110 0.48 +0.6 459,521 - AO356_02110 0.48 -0.8 459,521 - AO356_02110 0.48 +1.4 459,521 - AO356_02110 0.48 +0.0 459,521 - AO356_02110 0.48 +0.4 459,521 - AO356_02110 0.48 +0.9 459,701 - AO356_02110 0.86 +1.1 459,701 - AO356_02110 0.86 -0.0 459,701 - AO356_02110 0.86 -0.0 459,729 - -0.0 459,980 - AO356_02115 0.74 +0.4 460,369 - AO356_02120 0.85 +1.2 460,433 - -0.9 460,639 - AO356_02125 0.60 +0.1 460,639 - AO356_02125 0.60 -0.5 460,706 - AO356_02125 0.88 +0.4
Or see this region's nucleotide sequence