Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01230 and AO356_01235 are separated by 336 nucleotides AO356_01235 and AO356_01240 are separated by 27 nucleotides
AO356_01230: AO356_01230 - GntR family transcriptional regulator, at 281,894 to 282,607
_01230
AO356_01235: AO356_01235 - MFS transporter, at 282,944 to 284,293
_01235
AO356_01240: AO356_01240 - glucarate dehydratase, at 284,321 to 285,664
_01240
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -1
0
1
2 at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.205 kb on - strand, within AO356_01230 at 282.571 kb on + strand at 282.572 kb on - strand at 283.058 kb on + strand at 283.058 kb on + strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.131 kb on - strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.505 kb on + strand, within AO356_01235 at 283.506 kb on - strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.725 kb on - strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.316 kb on + strand at 284.316 kb on + strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.694 kb on + strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.784 kb on - strand, within AO356_01240 at 284.816 kb on + strand, within AO356_01240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 282,032 + AO356_01230 0.19 +0.1 282,032 + AO356_01230 0.19 +0.3 282,032 + AO356_01230 0.19 +0.7 282,205 - AO356_01230 0.44 +0.3 282,571 + +0.4 282,572 - -0.4 283,058 + +0.1 283,058 + -0.3 283,059 - +0.6 283,059 - -0.1 283,059 - +0.4 283,059 - +0.3 283,131 - AO356_01235 0.14 +1.3 283,295 + AO356_01235 0.26 +0.0 283,295 + AO356_01235 0.26 +0.3 283,295 + AO356_01235 0.26 +0.1 283,296 - AO356_01235 0.26 +1.0 283,296 - AO356_01235 0.26 +0.1 283,352 + AO356_01235 0.30 -0.1 283,352 + AO356_01235 0.30 +1.4 283,353 - AO356_01235 0.30 +0.1 283,353 - AO356_01235 0.30 -0.1 283,355 + AO356_01235 0.30 -0.4 283,355 + AO356_01235 0.30 +0.2 283,505 + AO356_01235 0.42 +0.3 283,506 - AO356_01235 0.42 +1.6 283,724 + AO356_01235 0.58 +0.9 283,724 + AO356_01235 0.58 -0.3 283,725 - AO356_01235 0.58 +0.3 283,748 + AO356_01235 0.60 -0.4 283,748 + AO356_01235 0.60 -0.1 283,748 + AO356_01235 0.60 +0.6 283,749 - AO356_01235 0.60 -0.6 283,749 - AO356_01235 0.60 -0.5 283,749 - AO356_01235 0.60 +2.6 283,859 + AO356_01235 0.68 +1.2 283,859 + AO356_01235 0.68 +1.1 283,860 - AO356_01235 0.68 -0.1 283,860 - AO356_01235 0.68 -0.6 284,049 - AO356_01235 0.82 -0.2 284,049 - AO356_01235 0.82 +0.1 284,316 + -0.3 284,316 + -0.7 284,317 - -0.4 284,317 - -0.5 284,317 - +0.8 284,317 - +0.7 284,317 - +0.4 284,317 - +0.4 284,694 + AO356_01240 0.28 -0.9 284,716 - AO356_01240 0.29 -0.4 284,716 - AO356_01240 0.29 -0.5 284,784 - AO356_01240 0.34 -0.9 284,816 + AO356_01240 0.37 -1.2
Or see this region's nucleotide sequence