Strain Fitness in Shewanella loihica PV-4 around Shew_1965

Experiment: L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1962 and Shew_1963 are separated by 34 nucleotidesShew_1963 and Shew_1964 are separated by 230 nucleotidesShew_1964 and pssA are separated by 11 nucleotidespssA and Shew_1966 are separated by 169 nucleotides Shew_1962: Shew_1962 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq), at 2,267,440 to 2,269,071 _1962 Shew_1963: Shew_1963 - hypothetical protein (RefSeq), at 2,269,106 to 2,269,282 _1963 Shew_1964: Shew_1964 - hypothetical protein (RefSeq), at 2,269,513 to 2,269,845 _1964 Shew_1965: pssA - phosphatidylserine synthase (RefSeq), at 2,269,857 to 2,271,170 pssA Shew_1966: Shew_1966 - DTW domain-containing protein (RefSeq), at 2,271,340 to 2,272,089 _1966 Position (kb) 2269 2270 2271 2272Strain fitness (log2 ratio) -1 0 1at 2269.283 kb on + strandat 2271.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
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2,269,283 + +0.4
2,271,364 - -0.4

Or see this region's nucleotide sequence