Strain Fitness in Shewanella loihica PV-4 around Shew_0245

Experiment: L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0244 and Shew_0245 are separated by 9 nucleotidesShew_0245 and Shew_0246 are separated by 153 nucleotides Shew_0244: Shew_0244 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 261,778 to 262,473 _0244 Shew_0245: Shew_0245 - molydopterin dinucleotide-binding region (RefSeq), at 262,483 to 265,521 _0245 Shew_0246: Shew_0246 - hypothetical protein (RefSeq), at 265,675 to 266,292 _0246 Position (kb) 262 263 264 265 266Strain fitness (log2 ratio) -2 -1 0 1at 261.494 kb on + strandat 261.502 kb on - strandat 261.504 kb on - strandat 261.588 kb on + strandat 261.670 kb on + strandat 261.670 kb on + strandat 261.670 kb on + strandat 261.670 kb on + strandat 261.774 kb on + strandat 261.780 kb on - strandat 261.786 kb on - strandat 261.786 kb on - strandat 261.823 kb on - strandat 261.825 kb on + strandat 261.825 kb on + strandat 261.825 kb on + strandat 261.825 kb on + strandat 261.828 kb on - strandat 261.828 kb on - strandat 261.833 kb on - strandat 261.833 kb on - strandat 261.842 kb on - strandat 261.850 kb on - strand, within Shew_0244at 261.863 kb on + strand, within Shew_0244at 261.871 kb on - strand, within Shew_0244at 261.878 kb on + strand, within Shew_0244at 261.880 kb on + strand, within Shew_0244at 261.888 kb on + strand, within Shew_0244at 261.893 kb on + strand, within Shew_0244at 261.894 kb on - strand, within Shew_0244at 261.992 kb on + strand, within Shew_0244at 262.006 kb on - strand, within Shew_0244at 262.037 kb on + strand, within Shew_0244at 262.079 kb on - strand, within Shew_0244at 262.084 kb on - strand, within Shew_0244at 262.084 kb on - strand, within Shew_0244at 262.098 kb on - strand, within Shew_0244at 262.112 kb on + strand, within Shew_0244at 262.247 kb on + strand, within Shew_0244at 262.255 kb on - strand, within Shew_0244at 262.356 kb on + strand, within Shew_0244at 262.364 kb on - strand, within Shew_0244at 262.429 kb on + strandat 262.723 kb on - strandat 262.951 kb on + strand, within Shew_0245at 262.993 kb on - strand, within Shew_0245at 263.142 kb on - strand, within Shew_0245at 263.144 kb on - strand, within Shew_0245at 263.190 kb on + strand, within Shew_0245at 263.201 kb on + strand, within Shew_0245at 263.259 kb on - strand, within Shew_0245at 263.336 kb on - strand, within Shew_0245at 263.362 kb on + strand, within Shew_0245at 263.396 kb on + strand, within Shew_0245at 263.506 kb on + strand, within Shew_0245at 263.513 kb on + strand, within Shew_0245at 263.521 kb on - strand, within Shew_0245at 263.521 kb on - strand, within Shew_0245at 263.731 kb on + strand, within Shew_0245at 263.875 kb on - strand, within Shew_0245at 264.012 kb on - strand, within Shew_0245at 264.138 kb on + strand, within Shew_0245at 264.221 kb on - strand, within Shew_0245at 264.330 kb on - strand, within Shew_0245at 264.376 kb on - strand, within Shew_0245at 264.521 kb on + strand, within Shew_0245at 264.558 kb on - strand, within Shew_0245at 264.821 kb on + strand, within Shew_0245at 264.829 kb on - strand, within Shew_0245at 264.852 kb on + strand, within Shew_0245at 264.885 kb on - strand, within Shew_0245at 264.938 kb on - strand, within Shew_0245at 264.938 kb on - strand, within Shew_0245at 264.938 kb on - strand, within Shew_0245at 265.248 kb on + strandat 265.273 kb on + strandat 265.592 kb on - strandat 265.755 kb on - strand, within Shew_0246at 265.988 kb on + strand, within Shew_0246

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
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261,494 + -0.1
261,502 - +0.0
261,504 - -0.2
261,588 + +0.1
261,670 + +0.0
261,670 + -0.8
261,670 + -0.1
261,670 + -0.1
261,774 + -0.3
261,780 - +0.2
261,786 - +0.5
261,786 - +0.1
261,823 - +0.2
261,825 + +0.0
261,825 + -0.6
261,825 + +0.1
261,825 + -0.1
261,828 - +1.3
261,828 - +0.3
261,833 - +0.5
261,833 - -0.3
261,842 - +0.1
261,850 - Shew_0244 0.10 +0.2
261,863 + Shew_0244 0.12 +0.0
261,871 - Shew_0244 0.13 +0.4
261,878 + Shew_0244 0.14 +0.2
261,880 + Shew_0244 0.15 -0.7
261,888 + Shew_0244 0.16 -0.1
261,893 + Shew_0244 0.17 -0.2
261,894 - Shew_0244 0.17 +0.3
261,992 + Shew_0244 0.31 -0.0
262,006 - Shew_0244 0.33 +0.2
262,037 + Shew_0244 0.37 -0.2
262,079 - Shew_0244 0.43 -0.1
262,084 - Shew_0244 0.44 -0.5
262,084 - Shew_0244 0.44 +0.5
262,098 - Shew_0244 0.46 -0.1
262,112 + Shew_0244 0.48 +0.7
262,247 + Shew_0244 0.67 +0.7
262,255 - Shew_0244 0.69 +0.1
262,356 + Shew_0244 0.83 -0.2
262,364 - Shew_0244 0.84 -0.0
262,429 + +0.1
262,723 - -0.1
262,951 + Shew_0245 0.15 +0.5
262,993 - Shew_0245 0.17 -0.0
263,142 - Shew_0245 0.22 +0.4
263,144 - Shew_0245 0.22 -1.6
263,190 + Shew_0245 0.23 -0.4
263,201 + Shew_0245 0.24 +0.1
263,259 - Shew_0245 0.26 -0.2
263,336 - Shew_0245 0.28 -0.2
263,362 + Shew_0245 0.29 -0.7
263,396 + Shew_0245 0.30 -0.0
263,506 + Shew_0245 0.34 -2.6
263,513 + Shew_0245 0.34 -0.1
263,521 - Shew_0245 0.34 +0.1
263,521 - Shew_0245 0.34 +0.2
263,731 + Shew_0245 0.41 +0.1
263,875 - Shew_0245 0.46 -0.9
264,012 - Shew_0245 0.50 +0.4
264,138 + Shew_0245 0.54 -0.8
264,221 - Shew_0245 0.57 -0.2
264,330 - Shew_0245 0.61 -0.5
264,376 - Shew_0245 0.62 +0.3
264,521 + Shew_0245 0.67 -1.0
264,558 - Shew_0245 0.68 +0.2
264,821 + Shew_0245 0.77 +0.3
264,829 - Shew_0245 0.77 -0.0
264,852 + Shew_0245 0.78 +0.0
264,885 - Shew_0245 0.79 +0.1
264,938 - Shew_0245 0.81 -0.1
264,938 - Shew_0245 0.81 +0.5
264,938 - Shew_0245 0.81 +0.4
265,248 + +0.1
265,273 + +0.1
265,592 - -0.0
265,755 - Shew_0246 0.13 +0.1
265,988 + Shew_0246 0.51 +0.1

Or see this region's nucleotide sequence