Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3342

Experiment: m.b. Cobalt chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3341 and Dshi_3342 are separated by 45 nucleotidesDshi_3342 and Dshi_3343 overlap by 4 nucleotides Dshi_3341: Dshi_3341 - alpha-L-glutamate ligase, RimK family (RefSeq), at 3,507,600 to 3,509,015 _3341 Dshi_3342: Dshi_3342 - Class I peptide chain release factor (RefSeq), at 3,509,061 to 3,509,483 _3342 Dshi_3343: Dshi_3343 - aminotransferase class-III (RefSeq), at 3,509,480 to 3,510,721 _3343 Position (kb) 3509 3510Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3508.247 kb on - strand, within Dshi_3341at 3508.247 kb on - strand, within Dshi_3341at 3508.316 kb on + strand, within Dshi_3341at 3508.444 kb on + strand, within Dshi_3341at 3508.444 kb on + strand, within Dshi_3341at 3508.483 kb on - strand, within Dshi_3341at 3508.563 kb on + strand, within Dshi_3341at 3508.633 kb on + strand, within Dshi_3341at 3508.643 kb on + strand, within Dshi_3341at 3508.709 kb on - strand, within Dshi_3341at 3508.802 kb on - strand, within Dshi_3341at 3508.919 kb on + strandat 3508.962 kb on - strandat 3508.974 kb on + strandat 3509.095 kb on + strandat 3509.095 kb on + strandat 3509.204 kb on - strand, within Dshi_3342at 3509.269 kb on - strand, within Dshi_3342at 3509.363 kb on - strand, within Dshi_3342at 3509.444 kb on + strandat 3509.444 kb on + strandat 3509.452 kb on - strandat 3509.452 kb on - strandat 3509.452 kb on - strandat 3509.466 kb on + strandat 3509.507 kb on + strandat 3509.571 kb on - strandat 3509.823 kb on - strand, within Dshi_3343at 3509.847 kb on - strand, within Dshi_3343at 3509.848 kb on - strand, within Dshi_3343at 3509.918 kb on - strand, within Dshi_3343at 3509.929 kb on + strand, within Dshi_3343at 3510.083 kb on + strand, within Dshi_3343at 3510.088 kb on + strand, within Dshi_3343at 3510.105 kb on + strand, within Dshi_3343at 3510.199 kb on + strand, within Dshi_3343at 3510.199 kb on + strand, within Dshi_3343at 3510.283 kb on - strand, within Dshi_3343at 3510.309 kb on - strand, within Dshi_3343at 3510.454 kb on + strand, within Dshi_3343at 3510.454 kb on + strand, within Dshi_3343

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
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3,508,247 - Dshi_3341 0.46 +0.5
3,508,247 - Dshi_3341 0.46 +0.4
3,508,316 + Dshi_3341 0.51 +0.5
3,508,444 + Dshi_3341 0.60 +3.2
3,508,444 + Dshi_3341 0.60 +1.3
3,508,483 - Dshi_3341 0.62 +0.5
3,508,563 + Dshi_3341 0.68 +0.3
3,508,633 + Dshi_3341 0.73 +0.3
3,508,643 + Dshi_3341 0.74 +1.1
3,508,709 - Dshi_3341 0.78 +3.0
3,508,802 - Dshi_3341 0.85 -0.2
3,508,919 + -0.4
3,508,962 - +1.0
3,508,974 + +0.7
3,509,095 + -0.4
3,509,095 + +0.6
3,509,204 - Dshi_3342 0.34 +0.3
3,509,269 - Dshi_3342 0.49 +0.6
3,509,363 - Dshi_3342 0.71 -0.3
3,509,444 + -0.0
3,509,444 + -0.0
3,509,452 - +0.2
3,509,452 - -0.4
3,509,452 - +0.7
3,509,466 + +0.5
3,509,507 + -0.4
3,509,571 - +1.6
3,509,823 - Dshi_3343 0.28 +0.3
3,509,847 - Dshi_3343 0.30 -2.3
3,509,848 - Dshi_3343 0.30 +0.3
3,509,918 - Dshi_3343 0.35 +1.1
3,509,929 + Dshi_3343 0.36 -0.3
3,510,083 + Dshi_3343 0.49 -0.7
3,510,088 + Dshi_3343 0.49 +0.0
3,510,105 + Dshi_3343 0.50 -0.4
3,510,199 + Dshi_3343 0.58 -0.2
3,510,199 + Dshi_3343 0.58 +1.6
3,510,283 - Dshi_3343 0.65 +0.1
3,510,309 - Dshi_3343 0.67 -0.6
3,510,454 + Dshi_3343 0.78 +0.4
3,510,454 + Dshi_3343 0.78 -0.7

Or see this region's nucleotide sequence