Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1302

Experiment: m.b. Cobalt chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1301 and Dshi_1302 overlap by 4 nucleotidesDshi_1302 and Dshi_1303 overlap by 4 nucleotidesDshi_1303 and Dshi_1304 overlap by 4 nucleotides Dshi_1301: Dshi_1301 - Carbamoyl-phosphate synthase L chain ATP-binding (RefSeq), at 1,355,325 to 1,357,310 _1301 Dshi_1302: Dshi_1302 - Glutathione S-transferase domain (RefSeq), at 1,357,307 to 1,357,975 _1302 Dshi_1303: Dshi_1303 - Hydroxymethylglutaryl-CoA lyase (RefSeq), at 1,357,972 to 1,358,835 _1303 Dshi_1304: Dshi_1304 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,358,832 to 1,359,620 _1304 Position (kb) 1357 1358Strain fitness (log2 ratio) -1 0 1at 1356.737 kb on + strand, within Dshi_1301at 1357.076 kb on + strand, within Dshi_1301at 1357.220 kb on + strandat 1357.244 kb on - strandat 1357.491 kb on - strand, within Dshi_1302at 1357.528 kb on + strand, within Dshi_1302at 1357.528 kb on + strand, within Dshi_1302at 1357.679 kb on + strand, within Dshi_1302at 1357.689 kb on + strand, within Dshi_1302at 1357.766 kb on + strand, within Dshi_1302at 1357.803 kb on - strand, within Dshi_1302at 1358.158 kb on - strand, within Dshi_1303at 1358.299 kb on + strand, within Dshi_1303at 1358.501 kb on + strand, within Dshi_1303at 1358.567 kb on + strandat 1358.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
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1,356,737 + Dshi_1301 0.71 +1.6
1,357,076 + Dshi_1301 0.88 -0.3
1,357,220 + +0.4
1,357,244 - -1.3
1,357,491 - Dshi_1302 0.28 -0.2
1,357,528 + Dshi_1302 0.33 +1.1
1,357,528 + Dshi_1302 0.33 -0.1
1,357,679 + Dshi_1302 0.56 +0.5
1,357,689 + Dshi_1302 0.57 +1.0
1,357,766 + Dshi_1302 0.69 +0.7
1,357,803 - Dshi_1302 0.74 +0.2
1,358,158 - Dshi_1303 0.22 +1.4
1,358,299 + Dshi_1303 0.38 +0.0
1,358,501 + Dshi_1303 0.61 +0.8
1,358,567 + -0.8
1,358,816 + +1.1

Or see this region's nucleotide sequence