Experiment: m.b. Cobalt chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1269 and Dshi_1270 are separated by 98 nucleotides Dshi_1270 and Dshi_1271 overlap by 4 nucleotides Dshi_1271 and Dshi_1272 are separated by 7 nucleotides
Dshi_1269: Dshi_1269 - thiamine pyrophosphate protein central region (RefSeq), at 1,317,836 to 1,319,701
_1269
Dshi_1270: Dshi_1270 - oxidoreductase domain protein (RefSeq), at 1,319,800 to 1,320,918
_1270
Dshi_1271: Dshi_1271 - Xylose isomerase domain protein TIM barrel (RefSeq), at 1,320,915 to 1,321,811
_1271
Dshi_1272: Dshi_1272 - oxidoreductase domain protein (RefSeq), at 1,321,819 to 1,322,952
_1272
Position (kb)
1319
1320
1321 Strain fitness (log2 ratio)
-2
-1
0
1 at 1318.833 kb on - strand, within Dshi_1269 at 1318.925 kb on + strand, within Dshi_1269 at 1318.946 kb on + strand, within Dshi_1269 at 1319.063 kb on - strand, within Dshi_1269 at 1319.120 kb on + strand, within Dshi_1269 at 1319.123 kb on - strand, within Dshi_1269 at 1319.130 kb on + strand, within Dshi_1269 at 1319.148 kb on - strand, within Dshi_1269 at 1319.178 kb on - strand, within Dshi_1269 at 1319.178 kb on - strand, within Dshi_1269 at 1319.267 kb on + strand, within Dshi_1269 at 1319.330 kb on + strand, within Dshi_1269 at 1319.372 kb on - strand, within Dshi_1269 at 1319.378 kb on - strand, within Dshi_1269 at 1319.379 kb on - strand, within Dshi_1269 at 1319.417 kb on - strand, within Dshi_1269 at 1319.628 kb on + strand at 1319.631 kb on + strand at 1319.662 kb on - strand at 1319.734 kb on - strand at 1319.734 kb on - strand at 1319.807 kb on + strand at 1319.889 kb on - strand at 1319.954 kb on - strand, within Dshi_1270 at 1319.959 kb on + strand, within Dshi_1270 at 1319.980 kb on + strand, within Dshi_1270 at 1320.185 kb on + strand, within Dshi_1270 at 1320.272 kb on - strand, within Dshi_1270 at 1320.508 kb on + strand, within Dshi_1270 at 1320.516 kb on - strand, within Dshi_1270 at 1320.652 kb on - strand, within Dshi_1270 at 1320.653 kb on - strand, within Dshi_1270 at 1320.682 kb on + strand, within Dshi_1270 at 1320.713 kb on + strand, within Dshi_1270 at 1320.721 kb on - strand, within Dshi_1270 at 1320.727 kb on - strand, within Dshi_1270 at 1320.832 kb on - strand at 1320.883 kb on - strand at 1321.044 kb on - strand, within Dshi_1271 at 1321.133 kb on - strand, within Dshi_1271 at 1321.219 kb on + strand, within Dshi_1271 at 1321.289 kb on + strand, within Dshi_1271 at 1321.305 kb on - strand, within Dshi_1271 at 1321.328 kb on + strand, within Dshi_1271 at 1321.351 kb on - strand, within Dshi_1271 at 1321.365 kb on - strand, within Dshi_1271 at 1321.375 kb on - strand, within Dshi_1271 at 1321.378 kb on + strand, within Dshi_1271 at 1321.440 kb on + strand, within Dshi_1271 at 1321.548 kb on - strand, within Dshi_1271 at 1321.714 kb on + strand, within Dshi_1271 at 1321.739 kb on - strand at 1321.750 kb on - strand at 1321.757 kb on + strand at 1321.766 kb on + strand at 1321.767 kb on + strand at 1321.778 kb on - strand at 1321.816 kb on + strand at 1321.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM remove 1,318,833 - Dshi_1269 0.53 +0.2 1,318,925 + Dshi_1269 0.58 -0.6 1,318,946 + Dshi_1269 0.59 -1.2 1,319,063 - Dshi_1269 0.66 -0.0 1,319,120 + Dshi_1269 0.69 -0.0 1,319,123 - Dshi_1269 0.69 -0.1 1,319,130 + Dshi_1269 0.69 +0.2 1,319,148 - Dshi_1269 0.70 +0.2 1,319,178 - Dshi_1269 0.72 -0.4 1,319,178 - Dshi_1269 0.72 +0.5 1,319,267 + Dshi_1269 0.77 -0.3 1,319,330 + Dshi_1269 0.80 -0.7 1,319,372 - Dshi_1269 0.82 -1.0 1,319,378 - Dshi_1269 0.83 -1.0 1,319,379 - Dshi_1269 0.83 +0.1 1,319,417 - Dshi_1269 0.85 -0.2 1,319,628 + +0.4 1,319,631 + +0.2 1,319,662 - -0.2 1,319,734 - +0.8 1,319,734 - +0.4 1,319,807 + +0.8 1,319,889 - -0.3 1,319,954 - Dshi_1270 0.14 -1.7 1,319,959 + Dshi_1270 0.14 -0.7 1,319,980 + Dshi_1270 0.16 -0.6 1,320,185 + Dshi_1270 0.34 +1.3 1,320,272 - Dshi_1270 0.42 -0.4 1,320,508 + Dshi_1270 0.63 +0.2 1,320,516 - Dshi_1270 0.64 +0.2 1,320,652 - Dshi_1270 0.76 -0.2 1,320,653 - Dshi_1270 0.76 -0.1 1,320,682 + Dshi_1270 0.79 -0.9 1,320,713 + Dshi_1270 0.82 +0.8 1,320,721 - Dshi_1270 0.82 -0.2 1,320,727 - Dshi_1270 0.83 -0.5 1,320,832 - +1.6 1,320,883 - -0.0 1,321,044 - Dshi_1271 0.14 -0.2 1,321,133 - Dshi_1271 0.24 -0.2 1,321,219 + Dshi_1271 0.34 -0.4 1,321,289 + Dshi_1271 0.42 -0.3 1,321,305 - Dshi_1271 0.43 +0.2 1,321,328 + Dshi_1271 0.46 -0.2 1,321,351 - Dshi_1271 0.49 -2.0 1,321,365 - Dshi_1271 0.50 +1.0 1,321,375 - Dshi_1271 0.51 +0.1 1,321,378 + Dshi_1271 0.52 +0.6 1,321,440 + Dshi_1271 0.59 +0.5 1,321,548 - Dshi_1271 0.71 -0.1 1,321,714 + Dshi_1271 0.89 -0.2 1,321,739 - +0.2 1,321,750 - -0.4 1,321,757 + +1.2 1,321,766 + -0.6 1,321,767 + -0.8 1,321,778 - +1.0 1,321,816 + -0.1 1,321,833 - -0.8
Or see this region's nucleotide sequence