Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1270

Experiment: m.b. Cobalt chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1269 and Dshi_1270 are separated by 98 nucleotidesDshi_1270 and Dshi_1271 overlap by 4 nucleotidesDshi_1271 and Dshi_1272 are separated by 7 nucleotides Dshi_1269: Dshi_1269 - thiamine pyrophosphate protein central region (RefSeq), at 1,317,836 to 1,319,701 _1269 Dshi_1270: Dshi_1270 - oxidoreductase domain protein (RefSeq), at 1,319,800 to 1,320,918 _1270 Dshi_1271: Dshi_1271 - Xylose isomerase domain protein TIM barrel (RefSeq), at 1,320,915 to 1,321,811 _1271 Dshi_1272: Dshi_1272 - oxidoreductase domain protein (RefSeq), at 1,321,819 to 1,322,952 _1272 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1at 1318.833 kb on - strand, within Dshi_1269at 1318.925 kb on + strand, within Dshi_1269at 1318.946 kb on + strand, within Dshi_1269at 1319.063 kb on - strand, within Dshi_1269at 1319.120 kb on + strand, within Dshi_1269at 1319.123 kb on - strand, within Dshi_1269at 1319.130 kb on + strand, within Dshi_1269at 1319.148 kb on - strand, within Dshi_1269at 1319.178 kb on - strand, within Dshi_1269at 1319.178 kb on - strand, within Dshi_1269at 1319.267 kb on + strand, within Dshi_1269at 1319.330 kb on + strand, within Dshi_1269at 1319.372 kb on - strand, within Dshi_1269at 1319.378 kb on - strand, within Dshi_1269at 1319.379 kb on - strand, within Dshi_1269at 1319.417 kb on - strand, within Dshi_1269at 1319.628 kb on + strandat 1319.631 kb on + strandat 1319.662 kb on - strandat 1319.734 kb on - strandat 1319.734 kb on - strandat 1319.807 kb on + strandat 1319.889 kb on - strandat 1319.954 kb on - strand, within Dshi_1270at 1319.959 kb on + strand, within Dshi_1270at 1319.980 kb on + strand, within Dshi_1270at 1320.185 kb on + strand, within Dshi_1270at 1320.272 kb on - strand, within Dshi_1270at 1320.508 kb on + strand, within Dshi_1270at 1320.516 kb on - strand, within Dshi_1270at 1320.652 kb on - strand, within Dshi_1270at 1320.653 kb on - strand, within Dshi_1270at 1320.682 kb on + strand, within Dshi_1270at 1320.713 kb on + strand, within Dshi_1270at 1320.721 kb on - strand, within Dshi_1270at 1320.727 kb on - strand, within Dshi_1270at 1320.832 kb on - strandat 1320.883 kb on - strandat 1321.044 kb on - strand, within Dshi_1271at 1321.133 kb on - strand, within Dshi_1271at 1321.219 kb on + strand, within Dshi_1271at 1321.289 kb on + strand, within Dshi_1271at 1321.305 kb on - strand, within Dshi_1271at 1321.328 kb on + strand, within Dshi_1271at 1321.351 kb on - strand, within Dshi_1271at 1321.365 kb on - strand, within Dshi_1271at 1321.375 kb on - strand, within Dshi_1271at 1321.378 kb on + strand, within Dshi_1271at 1321.440 kb on + strand, within Dshi_1271at 1321.548 kb on - strand, within Dshi_1271at 1321.714 kb on + strand, within Dshi_1271at 1321.739 kb on - strandat 1321.750 kb on - strandat 1321.757 kb on + strandat 1321.766 kb on + strandat 1321.767 kb on + strandat 1321.778 kb on - strandat 1321.816 kb on + strandat 1321.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
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1,318,833 - Dshi_1269 0.53 +0.2
1,318,925 + Dshi_1269 0.58 -0.6
1,318,946 + Dshi_1269 0.59 -1.2
1,319,063 - Dshi_1269 0.66 -0.0
1,319,120 + Dshi_1269 0.69 -0.0
1,319,123 - Dshi_1269 0.69 -0.1
1,319,130 + Dshi_1269 0.69 +0.2
1,319,148 - Dshi_1269 0.70 +0.2
1,319,178 - Dshi_1269 0.72 -0.4
1,319,178 - Dshi_1269 0.72 +0.5
1,319,267 + Dshi_1269 0.77 -0.3
1,319,330 + Dshi_1269 0.80 -0.7
1,319,372 - Dshi_1269 0.82 -1.0
1,319,378 - Dshi_1269 0.83 -1.0
1,319,379 - Dshi_1269 0.83 +0.1
1,319,417 - Dshi_1269 0.85 -0.2
1,319,628 + +0.4
1,319,631 + +0.2
1,319,662 - -0.2
1,319,734 - +0.8
1,319,734 - +0.4
1,319,807 + +0.8
1,319,889 - -0.3
1,319,954 - Dshi_1270 0.14 -1.7
1,319,959 + Dshi_1270 0.14 -0.7
1,319,980 + Dshi_1270 0.16 -0.6
1,320,185 + Dshi_1270 0.34 +1.3
1,320,272 - Dshi_1270 0.42 -0.4
1,320,508 + Dshi_1270 0.63 +0.2
1,320,516 - Dshi_1270 0.64 +0.2
1,320,652 - Dshi_1270 0.76 -0.2
1,320,653 - Dshi_1270 0.76 -0.1
1,320,682 + Dshi_1270 0.79 -0.9
1,320,713 + Dshi_1270 0.82 +0.8
1,320,721 - Dshi_1270 0.82 -0.2
1,320,727 - Dshi_1270 0.83 -0.5
1,320,832 - +1.6
1,320,883 - -0.0
1,321,044 - Dshi_1271 0.14 -0.2
1,321,133 - Dshi_1271 0.24 -0.2
1,321,219 + Dshi_1271 0.34 -0.4
1,321,289 + Dshi_1271 0.42 -0.3
1,321,305 - Dshi_1271 0.43 +0.2
1,321,328 + Dshi_1271 0.46 -0.2
1,321,351 - Dshi_1271 0.49 -2.0
1,321,365 - Dshi_1271 0.50 +1.0
1,321,375 - Dshi_1271 0.51 +0.1
1,321,378 + Dshi_1271 0.52 +0.6
1,321,440 + Dshi_1271 0.59 +0.5
1,321,548 - Dshi_1271 0.71 -0.1
1,321,714 + Dshi_1271 0.89 -0.2
1,321,739 - +0.2
1,321,750 - -0.4
1,321,757 + +1.2
1,321,766 + -0.6
1,321,767 + -0.8
1,321,778 - +1.0
1,321,816 + -0.1
1,321,833 - -0.8

Or see this region's nucleotide sequence