Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4506

Experiment: BHIS with Cephalothin 0.625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cephalothin 0.625 mg/ml
5,919,801	-		BT4504	0.54	-1.8
5,919,801	-		BT4504	0.54	-1.3
5,919,801	-		BT4504	0.54	+0.6
5,919,859	-		BT4504	0.62	-0.3
5,919,888	+		BT4504	0.67	+1.9
5,919,936	+		BT4504	0.74	-0.6
5,919,936	+		BT4504	0.74	-0.9
5,919,936	+		BT4504	0.74	-0.4
5,919,937	-		BT4504	0.74	-1.9
5,919,937	-		BT4504	0.74	-3.0
5,919,953	+		BT4504	0.76	-1.1
5,920,061	+				-0.3
5,920,062	-				+0.1
5,920,092	-				+0.1
5,920,107	-				+0.6
5,920,109	+				-1.6
5,920,218	+		BT4505	0.20	-1.0
5,920,218	+		BT4505	0.20	+0.1
5,920,218	+		BT4505	0.20	+0.2
5,920,219	-		BT4505	0.20	+1.7
5,920,219	-		BT4505	0.20	+1.3
5,920,219	-		BT4505	0.20	-1.3
5,920,366	+		BT4505	0.48	-0.2
5,920,366	+		BT4505	0.48	-0.5
5,920,381	+		BT4505	0.50	-2.0
5,920,382	-		BT4505	0.50	+0.3
5,920,426	-		BT4505	0.59	-0.8
5,920,426	-		BT4505	0.59	-1.3
5,920,438	+		BT4505	0.61	-1.5
5,920,494	+		BT4505	0.71	-2.1
5,920,494	+		BT4505	0.71	-1.5
5,920,587	-		BT4505	0.88	-0.9
5,920,642	+				+0.1
5,920,643	-				-1.3
5,920,668	+				-0.5
5,920,696	+				-3.3
5,920,842	-		BT4506	0.12	-0.1
5,920,842	-		BT4506	0.12	+0.2
5,920,846	+		BT4506	0.13	-0.9
5,920,847	-		BT4506	0.13	+0.3
5,920,888	+		BT4506	0.16	-1.0
5,920,985	+		BT4506	0.23	-3.6
5,921,007	+		BT4506	0.24	-2.0
5,921,009	+		BT4506	0.24	-2.6
5,921,087	+		BT4506	0.30	-0.6
5,921,087	+		BT4506	0.30	-1.4
5,921,110	+		BT4506	0.32	-1.4
5,921,123	+		BT4506	0.33	-1.3
5,921,141	+		BT4506	0.34	-0.7
5,921,141	+		BT4506	0.34	-1.5
5,921,142	-		BT4506	0.34	-2.3
5,921,146	-		BT4506	0.34	-0.4
5,921,189	+		BT4506	0.38	-0.8
5,921,318	+		BT4506	0.47	-0.7
5,921,352	-		BT4506	0.49	-3.0
5,921,361	+		BT4506	0.50	-3.2
5,921,361	+		BT4506	0.50	-1.7
5,921,361	+		BT4506	0.50	-1.2
5,921,440	-		BT4506	0.56	+1.1
5,921,440	-				+1.1
5,921,464	+		BT4506	0.58	-2.7
5,921,467	-		BT4506	0.58	+0.1
5,921,721	-		BT4506	0.76	-0.8
5,921,749	+		BT4506	0.78	-2.8
5,921,753	-		BT4506	0.79	-1.3
5,921,757	+		BT4506	0.79	-2.9
5,921,759	+		BT4506	0.79	-0.5
5,921,924	+				-1.9
5,921,925	-				-3.0
5,921,952	+				-4.0
5,921,953	-				+0.7
5,921,954	+				-3.2
5,921,990	+				-1.1
5,922,040	+				-3.7
5,922,061	+				-0.7
5,922,061	+				-3.2
5,922,071	-				-1.2
5,922,135	+				+0.1
5,922,181	+		BT4507	0.11	-2.5
5,922,181	+		BT4507	0.11	-3.6
5,922,182	-		BT4507	0.11	-1.3
5,922,183	+		BT4507	0.11	+1.1
5,922,184	-		BT4507	0.12	-3.4
5,922,184	-		BT4507	0.12	-2.7
5,922,189	-		BT4507	0.12	-2.4
5,922,189	-		BT4507	0.12	-3.4
5,922,371	+		BT4507	0.33	-4.0
5,922,372	-		BT4507	0.33	-3.7
5,922,627	-		BT4507	0.62	-0.9
5,922,743	+		BT4507	0.75	-2.1
5,922,779	-		BT4507	0.79	-4.9
5,922,818	-		BT4507	0.83	-2.4
5,922,921	+				-3.8
5,922,922	-				-3.5
5,922,990	-				+3.5
5,923,017	+				-3.5
5,923,018	-				+1.1
5,923,030	+				-1.7