Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4197

Experiment: BHIS with Cephalothin 0.625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cephalothin 0.625 mg/ml
5,531,128	-		BT4194	0.71	+0.5
5,531,141	-		BT4194	0.72	+0.1
5,531,143	+		BT4194	0.73	+0.6
5,531,143	+		BT4194	0.73	-1.2
5,531,144	-		BT4194	0.73	-2.3
5,531,253	+		BT4194	0.84	-0.5
5,531,254	-		BT4194	0.84	+0.6
5,531,420	-				-0.2
5,531,472	+		BT4195	0.20	-1.9
5,531,551	+		BT4195	0.57	-3.0
5,531,640	-				+0.1
5,531,669	+				-1.7
5,531,748	-				+0.6
5,531,772	+		BT4196	0.17	-1.3
5,532,008	-				-1.7
5,532,021	-				-2.8
5,532,024	-				-0.7
5,532,062	-				+1.1
5,532,063	+				+2.7
5,532,064	-				-1.6
5,532,064	-				-0.3
5,532,074	+				-0.2
5,532,075	-				-2.6
5,532,075	-				-1.5
5,532,098	+				-1.2
5,532,099	-				+0.0
5,532,101	-				-0.8
5,532,101	-				+1.1
5,532,185	+		BT4197	0.24	-1.4
5,532,198	+		BT4197	0.28	-0.7
5,532,208	-		BT4197	0.31	-0.9
5,532,215	+		BT4197	0.34	-2.9
5,532,234	-		BT4197	0.40	-1.5
5,532,237	+		BT4197	0.41	+0.1
5,532,240	+		BT4197	0.42	-0.6
5,532,282	-		BT4197	0.56	-2.8
5,532,344	+		BT4197	0.76	-1.7
5,532,345	-		BT4197	0.76	-1.0
5,532,367	-		BT4197	0.83	+0.6
5,532,377	+		BT4197	0.87	-1.5
5,532,401	-				-0.5
5,532,489	-				-0.2
5,532,489	-				-1.2
5,532,498	+				-1.0
5,532,599	-				+0.1
5,532,610	+				+0.1
5,532,614	+				+1.3
5,532,631	+				+0.3
5,532,632	-				+1.1
5,532,737	+		BT4198	0.33	-2.0
5,532,782	+		BT4198	0.46	-0.0
5,532,783	-		BT4198	0.46	-0.6
5,532,799	-		BT4198	0.50	-1.7
5,532,808	-		BT4198	0.53	-0.0
5,532,867	+		BT4198	0.69	-1.2
5,532,876	-		BT4198	0.71	-0.9
5,532,949	+				+0.7
5,533,012	-				+0.5
5,533,034	+				+1.1
5,533,034	+				-1.2
5,533,035	-				-0.9
5,533,036	+				+0.6
5,533,037	-				-0.2
5,533,038	+				+0.8
5,533,038	+				-0.1
5,533,039	-				-0.7
5,533,294	-		BT4199	0.17	-2.2
5,533,294	-		BT4199	0.17	-0.6
5,533,294	-		BT4199	0.17	-0.9
5,533,298	+		BT4199	0.18	-3.3
5,533,299	-		BT4199	0.18	+0.1
5,533,299	-		BT4199	0.18	-0.9
5,533,299	-		BT4199	0.18	-1.3
5,533,302	+		BT4199	0.18	-1.2
5,533,400	-		BT4199	0.24	-3.2
5,533,413	-		BT4199	0.25	-4.7