Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3201

Experiment: MoLS4 with L-Serine (N), without W

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecR and DVU3201 are separated by 402 nucleotidesDVU3201 and DVU3202 are separated by 237 nucleotides DVU3200: recR - recombination protein RecR (TIGR), at 3,362,805 to 3,363,410 recR DVU3201: DVU3201 - hypothetical protein (TIGR), at 3,363,813 to 3,364,874 DVU3201 DVU3202: DVU3202 - hydrolase, TatD family (TIGR), at 3,365,112 to 3,365,948 DVU3202 Position (kb) 3363 3364 3365Strain fitness (log2 ratio) -1 0 1at 3362.831 kb on - strandat 3362.875 kb on + strand, within recRat 3362.947 kb on + strand, within recRat 3362.955 kb on - strand, within recRat 3362.965 kb on + strand, within recRat 3362.973 kb on - strand, within recRat 3362.981 kb on + strand, within recRat 3363.107 kb on - strand, within recRat 3363.111 kb on + strand, within recRat 3363.228 kb on - strand, within recRat 3363.236 kb on + strand, within recRat 3363.329 kb on + strand, within recRat 3363.355 kb on + strandat 3363.365 kb on + strandat 3363.390 kb on - strandat 3363.395 kb on - strandat 3363.424 kb on + strandat 3363.437 kb on - strandat 3363.747 kb on - strandat 3363.882 kb on + strandat 3363.883 kb on + strandat 3363.883 kb on + strandat 3363.931 kb on + strand, within DVU3201at 3363.931 kb on + strand, within DVU3201at 3364.038 kb on - strand, within DVU3201at 3364.091 kb on + strand, within DVU3201at 3364.242 kb on + strand, within DVU3201at 3364.242 kb on + strand, within DVU3201at 3364.242 kb on + strand, within DVU3201at 3364.242 kb on + strand, within DVU3201at 3364.243 kb on - strand, within DVU3201at 3364.250 kb on - strand, within DVU3201at 3364.250 kb on - strand, within DVU3201at 3364.346 kb on + strand, within DVU3201at 3364.383 kb on - strand, within DVU3201at 3364.443 kb on - strand, within DVU3201at 3364.466 kb on + strand, within DVU3201at 3364.478 kb on + strand, within DVU3201at 3364.508 kb on - strand, within DVU3201at 3364.543 kb on - strand, within DVU3201at 3364.609 kb on + strand, within DVU3201at 3364.621 kb on + strand, within DVU3201at 3364.677 kb on + strand, within DVU3201at 3364.708 kb on + strand, within DVU3201at 3364.729 kb on + strand, within DVU3201at 3364.759 kb on + strand, within DVU3201at 3364.762 kb on - strand, within DVU3201at 3364.790 kb on - strandat 3364.875 kb on + strandat 3364.877 kb on - strandat 3364.886 kb on + strandat 3364.888 kb on - strandat 3364.888 kb on - strandat 3364.996 kb on + strandat 3365.125 kb on + strandat 3365.170 kb on + strandat 3365.204 kb on - strand, within DVU3202at 3365.302 kb on + strand, within DVU3202at 3365.354 kb on + strand, within DVU3202at 3365.406 kb on + strand, within DVU3202at 3365.414 kb on - strand, within DVU3202at 3365.541 kb on + strand, within DVU3202at 3365.549 kb on - strand, within DVU3202at 3365.585 kb on + strand, within DVU3202at 3365.586 kb on - strand, within DVU3202at 3365.702 kb on + strand, within DVU3202at 3365.705 kb on - strand, within DVU3202at 3365.726 kb on + strand, within DVU3202at 3365.734 kb on - strand, within DVU3202at 3365.734 kb on - strand, within DVU3202at 3365.779 kb on + strand, within DVU3202at 3365.867 kb on + strandat 3365.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without W
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3,362,831 - +0.1
3,362,875 + recR DVU3200 0.12 -0.4
3,362,947 + recR DVU3200 0.23 +0.7
3,362,955 - recR DVU3200 0.25 -0.0
3,362,965 + recR DVU3200 0.26 +0.3
3,362,973 - recR DVU3200 0.28 -0.5
3,362,981 + recR DVU3200 0.29 -1.3
3,363,107 - recR DVU3200 0.50 -0.2
3,363,111 + recR DVU3200 0.50 -0.8
3,363,228 - recR DVU3200 0.70 -0.8
3,363,236 + recR DVU3200 0.71 -0.1
3,363,329 + recR DVU3200 0.86 -0.7
3,363,355 + -0.2
3,363,365 + -0.4
3,363,390 - -0.4
3,363,395 - +0.1
3,363,424 + -1.1
3,363,437 - -0.3
3,363,747 - +0.3
3,363,882 + -0.1
3,363,883 + -0.0
3,363,883 + -0.1
3,363,931 + DVU3201 0.11 +0.8
3,363,931 + DVU3201 0.11 -0.5
3,364,038 - DVU3201 0.21 -0.5
3,364,091 + DVU3201 0.26 +0.4
3,364,242 + DVU3201 0.40 -0.1
3,364,242 + DVU3201 0.40 -0.7
3,364,242 + DVU3201 0.40 -0.0
3,364,242 + DVU3201 0.40 +0.7
3,364,243 - DVU3201 0.40 -0.2
3,364,250 - DVU3201 0.41 +0.4
3,364,250 - DVU3201 0.41 +0.4
3,364,346 + DVU3201 0.50 -0.1
3,364,383 - DVU3201 0.54 +0.5
3,364,443 - DVU3201 0.59 +0.2
3,364,466 + DVU3201 0.61 -0.2
3,364,478 + DVU3201 0.63 +0.1
3,364,508 - DVU3201 0.65 -0.0
3,364,543 - DVU3201 0.69 +0.9
3,364,609 + DVU3201 0.75 +0.2
3,364,621 + DVU3201 0.76 +0.4
3,364,677 + DVU3201 0.81 -0.5
3,364,708 + DVU3201 0.84 +0.5
3,364,729 + DVU3201 0.86 +0.2
3,364,759 + DVU3201 0.89 +0.4
3,364,762 - DVU3201 0.89 +1.7
3,364,790 - +0.1
3,364,875 + +0.5
3,364,877 - +0.1
3,364,886 + -0.7
3,364,888 - -0.4
3,364,888 - -0.1
3,364,996 + +0.2
3,365,125 + -0.1
3,365,170 + +0.2
3,365,204 - DVU3202 0.11 -0.5
3,365,302 + DVU3202 0.23 -0.4
3,365,354 + DVU3202 0.29 -0.1
3,365,406 + DVU3202 0.35 -0.1
3,365,414 - DVU3202 0.36 -0.2
3,365,541 + DVU3202 0.51 -0.2
3,365,549 - DVU3202 0.52 +1.2
3,365,585 + DVU3202 0.57 +0.3
3,365,586 - DVU3202 0.57 -0.5
3,365,702 + DVU3202 0.70 -0.8
3,365,705 - DVU3202 0.71 -0.3
3,365,726 + DVU3202 0.73 -0.3
3,365,734 - DVU3202 0.74 -1.4
3,365,734 - DVU3202 0.74 -1.5
3,365,779 + DVU3202 0.80 +0.1
3,365,867 + -0.1
3,365,868 + -0.2

Or see this region's nucleotide sequence