Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3191

Experiment: MoLS4 with L-Serine (N), without W

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3190 and rluC are separated by 77 nucleotidesrluC and DVU3192 overlap by 4 nucleotides DVU3190: DVU3190 - hypothetical protein (TIGR), at 3,349,691 to 3,351,358 DVU3190 DVU3191: rluC - ribosomal large subunit pseudouridine synthase C (TIGR), at 3,351,436 to 3,352,608 rluC DVU3192: DVU3192 - glycosyl transferase, group 1 family protein (TIGR), at 3,352,605 to 3,353,765 DVU3192 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -2 -1 0 1at 3351.561 kb on + strand, within rluCat 3351.782 kb on + strand, within rluCat 3351.911 kb on + strand, within rluCat 3351.917 kb on + strand, within rluCat 3351.960 kb on - strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.281 kb on + strand, within rluCat 3352.454 kb on + strand, within rluCat 3352.502 kb on + strandat 3352.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without W
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3,351,561 + rluC DVU3191 0.11 -0.8
3,351,782 + rluC DVU3191 0.29 -1.3
3,351,911 + rluC DVU3191 0.40 +0.1
3,351,917 + rluC DVU3191 0.41 -2.0
3,351,960 - rluC DVU3191 0.45 -1.1
3,352,140 + rluC DVU3191 0.60 -0.3
3,352,140 + rluC DVU3191 0.60 +0.1
3,352,281 + rluC DVU3191 0.72 -0.0
3,352,454 + rluC DVU3191 0.87 +0.1
3,352,502 + +0.6
3,352,530 + -0.5

Or see this region's nucleotide sequence