Experiment: H2 N-free with 10mM D-glucosamine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01020 and MMJJ_RS01030 are separated by 439 nucleotides
MMJJ_RS01020: MMJJ_RS01020 - serine protease, at 199,331 to 200,107
_RS01020
MMJJ_RS01030: MMJJ_RS01030 - hypothetical protein, at 200,547 to 202,052
_RS01030
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 198.331 kb on + strand at 198.331 kb on + strand at 198.331 kb on + strand at 198.331 kb on + strand at 198.351 kb on - strand at 198.361 kb on - strand at 198.362 kb on + strand at 198.401 kb on - strand at 198.402 kb on + strand at 198.402 kb on + strand at 198.413 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.418 kb on + strand at 198.418 kb on + strand at 198.418 kb on + strand at 198.434 kb on - strand at 198.435 kb on + strand at 198.439 kb on - strand at 198.458 kb on + strand at 198.465 kb on - strand at 198.478 kb on + strand at 198.543 kb on - strand at 198.581 kb on - strand at 198.582 kb on + strand at 198.665 kb on + strand at 198.707 kb on + strand at 198.775 kb on + strand at 198.825 kb on - strand at 198.825 kb on - strand at 198.854 kb on - strand at 198.873 kb on + strand at 198.891 kb on + strand at 198.910 kb on - strand at 198.939 kb on - strand at 198.939 kb on - strand at 198.940 kb on + strand at 198.943 kb on + strand at 198.943 kb on + strand at 199.320 kb on + strand at 199.333 kb on + strand at 199.349 kb on + strand at 199.375 kb on - strand at 199.448 kb on + strand, within MMJJ_RS01020 at 199.448 kb on + strand, within MMJJ_RS01020 at 199.454 kb on + strand, within MMJJ_RS01020 at 199.496 kb on - strand, within MMJJ_RS01020 at 199.528 kb on - strand, within MMJJ_RS01020 at 199.528 kb on - strand, within MMJJ_RS01020 at 199.528 kb on - strand, within MMJJ_RS01020 at 199.571 kb on - strand, within MMJJ_RS01020 at 199.575 kb on - strand, within MMJJ_RS01020 at 199.601 kb on + strand, within MMJJ_RS01020 at 199.606 kb on - strand, within MMJJ_RS01020 at 199.657 kb on - strand, within MMJJ_RS01020 at 199.679 kb on - strand, within MMJJ_RS01020 at 199.758 kb on + strand, within MMJJ_RS01020 at 199.817 kb on - strand, within MMJJ_RS01020 at 199.824 kb on + strand, within MMJJ_RS01020 at 199.826 kb on - strand, within MMJJ_RS01020 at 199.865 kb on - strand, within MMJJ_RS01020 at 199.866 kb on + strand, within MMJJ_RS01020 at 199.869 kb on - strand, within MMJJ_RS01020 at 199.869 kb on - strand, within MMJJ_RS01020 at 199.870 kb on + strand, within MMJJ_RS01020 at 199.870 kb on + strand, within MMJJ_RS01020 at 199.870 kb on + strand, within MMJJ_RS01020 at 199.870 kb on + strand at 199.870 kb on + strand, within MMJJ_RS01020 at 199.940 kb on - strand, within MMJJ_RS01020 at 199.941 kb on + strand, within MMJJ_RS01020 at 200.001 kb on + strand, within MMJJ_RS01020 at 200.003 kb on + strand, within MMJJ_RS01020 at 200.071 kb on - strand at 200.072 kb on + strand at 200.111 kb on - strand at 200.112 kb on + strand at 200.112 kb on + strand at 200.129 kb on - strand at 200.130 kb on + strand at 200.130 kb on + strand at 200.130 kb on + strand at 200.132 kb on - strand at 200.132 kb on - strand at 200.133 kb on + strand at 200.133 kb on + strand at 200.135 kb on - strand at 200.135 kb on - strand at 200.140 kb on + strand at 200.172 kb on - strand at 200.172 kb on - strand at 200.180 kb on - strand at 200.207 kb on - strand at 200.207 kb on - strand at 200.212 kb on - strand at 200.212 kb on - strand at 200.224 kb on + strand at 200.254 kb on - strand at 200.290 kb on + strand at 200.291 kb on - strand at 200.292 kb on + strand at 200.292 kb on + strand at 200.298 kb on + strand at 200.304 kb on + strand at 200.325 kb on - strand at 200.448 kb on - strand at 200.525 kb on - strand at 200.533 kb on - strand at 200.538 kb on - strand at 200.539 kb on + strand at 200.558 kb on - strand at 200.558 kb on - strand at 200.571 kb on + strand at 200.622 kb on + strand at 200.622 kb on + strand at 200.648 kb on - strand at 200.649 kb on + strand at 200.703 kb on + strand, within MMJJ_RS01030 at 200.705 kb on - strand, within MMJJ_RS01030 at 200.705 kb on - strand, within MMJJ_RS01030 at 200.706 kb on + strand, within MMJJ_RS01030 at 200.709 kb on - strand, within MMJJ_RS01030 at 200.775 kb on + strand, within MMJJ_RS01030 at 200.778 kb on - strand, within MMJJ_RS01030 at 200.873 kb on + strand, within MMJJ_RS01030 at 200.880 kb on - strand, within MMJJ_RS01030 at 200.925 kb on + strand, within MMJJ_RS01030 at 200.925 kb on + strand, within MMJJ_RS01030 at 200.927 kb on + strand, within MMJJ_RS01030 at 200.927 kb on + strand, within MMJJ_RS01030 at 200.927 kb on + strand, within MMJJ_RS01030 at 200.927 kb on + strand, within MMJJ_RS01030 at 200.942 kb on - strand, within MMJJ_RS01030 at 200.957 kb on - strand, within MMJJ_RS01030 at 200.958 kb on + strand, within MMJJ_RS01030 at 200.987 kb on - strand, within MMJJ_RS01030 at 200.987 kb on - strand, within MMJJ_RS01030 at 200.987 kb on - strand, within MMJJ_RS01030 at 200.988 kb on + strand, within MMJJ_RS01030 at 200.988 kb on + strand, within MMJJ_RS01030 at 200.988 kb on + strand, within MMJJ_RS01030 at 200.988 kb on + strand, within MMJJ_RS01030 at 200.988 kb on + strand, within MMJJ_RS01030 at 201.000 kb on - strand, within MMJJ_RS01030 at 201.001 kb on + strand, within MMJJ_RS01030 at 201.005 kb on + strand, within MMJJ_RS01030 at 201.088 kb on - strand, within MMJJ_RS01030
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine remove 198,331 + +0.5 198,331 + -0.5 198,331 + +0.3 198,331 + +0.2 198,351 - -1.0 198,361 - -0.3 198,362 + -1.1 198,401 - -0.2 198,402 + +4.0 198,402 + +0.5 198,413 - -0.3 198,417 - +0.3 198,417 - +0.9 198,418 + +0.0 198,418 + -0.5 198,418 + -1.8 198,434 - +0.5 198,435 + -0.9 198,439 - -0.6 198,458 + -0.6 198,465 - +0.1 198,478 + -0.3 198,543 - +0.6 198,581 - -0.2 198,582 + -0.5 198,665 + -0.6 198,707 + +1.0 198,775 + -0.6 198,825 - -1.0 198,825 - +0.0 198,854 - +0.3 198,873 + +0.8 198,891 + +0.7 198,910 - +1.1 198,939 - +0.6 198,939 - +0.9 198,940 + -0.3 198,943 + +0.9 198,943 + -2.2 199,320 + -0.9 199,333 + +0.3 199,349 + +0.8 199,375 - +0.6 199,448 + MMJJ_RS01020 0.15 -0.7 199,448 + MMJJ_RS01020 0.15 +0.5 199,454 + MMJJ_RS01020 0.16 +0.2 199,496 - MMJJ_RS01020 0.21 -0.4 199,528 - MMJJ_RS01020 0.25 +0.4 199,528 - MMJJ_RS01020 0.25 +1.4 199,528 - MMJJ_RS01020 0.25 +0.1 199,571 - MMJJ_RS01020 0.31 -1.4 199,575 - MMJJ_RS01020 0.31 +0.8 199,601 + MMJJ_RS01020 0.35 -0.4 199,606 - MMJJ_RS01020 0.35 +4.2 199,657 - MMJJ_RS01020 0.42 -0.1 199,679 - MMJJ_RS01020 0.45 +1.3 199,758 + MMJJ_RS01020 0.55 -0.5 199,817 - MMJJ_RS01020 0.63 -2.5 199,824 + MMJJ_RS01020 0.63 -0.4 199,826 - MMJJ_RS01020 0.64 +0.3 199,865 - MMJJ_RS01020 0.69 +0.3 199,866 + MMJJ_RS01020 0.69 +0.3 199,869 - MMJJ_RS01020 0.69 -0.3 199,869 - MMJJ_RS01020 0.69 +1.2 199,870 + MMJJ_RS01020 0.69 -1.7 199,870 + MMJJ_RS01020 0.69 +1.6 199,870 + MMJJ_RS01020 0.69 -0.1 199,870 + +0.0 199,870 + MMJJ_RS01020 0.69 +0.6 199,940 - MMJJ_RS01020 0.78 -0.3 199,941 + MMJJ_RS01020 0.79 -1.2 200,001 + MMJJ_RS01020 0.86 +0.2 200,003 + MMJJ_RS01020 0.86 +0.6 200,071 - +1.0 200,072 + -1.6 200,111 - -1.0 200,112 + -2.7 200,112 + -1.2 200,129 - +0.4 200,130 + -0.4 200,130 + -0.2 200,130 + -0.7 200,132 - -2.8 200,132 - +0.6 200,133 + +1.5 200,133 + +0.5 200,135 - +2.5 200,135 - +0.4 200,140 + -0.2 200,172 - +0.6 200,172 - +0.9 200,180 - +1.0 200,207 - -0.2 200,207 - +0.1 200,212 - +0.5 200,212 - -1.7 200,224 + +0.5 200,254 - +1.0 200,290 + -0.1 200,291 - +0.0 200,292 + -0.7 200,292 + -0.6 200,298 + +0.9 200,304 + -0.8 200,325 - +0.1 200,448 - -0.5 200,525 - +4.0 200,533 - +0.4 200,538 - -0.3 200,539 + -1.4 200,558 - +2.3 200,558 - +0.6 200,571 + +0.9 200,622 + -1.7 200,622 + +0.6 200,648 - -0.2 200,649 + +0.5 200,703 + MMJJ_RS01030 0.10 -0.5 200,705 - MMJJ_RS01030 0.10 -0.6 200,705 - MMJJ_RS01030 0.10 -0.6 200,706 + MMJJ_RS01030 0.11 +0.8 200,709 - MMJJ_RS01030 0.11 +0.5 200,775 + MMJJ_RS01030 0.15 +0.0 200,778 - MMJJ_RS01030 0.15 +0.4 200,873 + MMJJ_RS01030 0.22 -0.3 200,880 - MMJJ_RS01030 0.22 -0.3 200,925 + MMJJ_RS01030 0.25 +0.8 200,925 + MMJJ_RS01030 0.25 -0.9 200,927 + MMJJ_RS01030 0.25 -0.4 200,927 + MMJJ_RS01030 0.25 -0.3 200,927 + MMJJ_RS01030 0.25 -0.3 200,927 + MMJJ_RS01030 0.25 -1.1 200,942 - MMJJ_RS01030 0.26 +0.9 200,957 - MMJJ_RS01030 0.27 -0.8 200,958 + MMJJ_RS01030 0.27 +0.1 200,987 - MMJJ_RS01030 0.29 -0.7 200,987 - MMJJ_RS01030 0.29 -2.7 200,987 - MMJJ_RS01030 0.29 -2.7 200,988 + MMJJ_RS01030 0.29 +0.5 200,988 + MMJJ_RS01030 0.29 +0.1 200,988 + MMJJ_RS01030 0.29 -2.6 200,988 + MMJJ_RS01030 0.29 -0.4 200,988 + MMJJ_RS01030 0.29 -1.4 201,000 - MMJJ_RS01030 0.30 -0.1 201,001 + MMJJ_RS01030 0.30 +0.0 201,005 + MMJJ_RS01030 0.30 -0.3 201,088 - MMJJ_RS01030 0.36 +0.2
Or see this region's nucleotide sequence