Experiment: H2 N-free with 10mM D-glucosamine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00815 and MMJJ_RS00820 are separated by 0 nucleotides MMJJ_RS00820 and MMJJ_RS00825 are separated by 121 nucleotides
MMJJ_RS00815: MMJJ_RS00815 - ASKHA domain-containing protein, at 154,625 to 156,403
_RS00815
MMJJ_RS00820: MMJJ_RS00820 - MtaA/CmuA family methyltransferase, at 156,404 to 157,432
_RS00820
MMJJ_RS00825: MMJJ_RS00825 - uroporphyrinogen decarboxylase family protein, at 157,554 to 158,645
_RS00825
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 155.419 kb on - strand, within MMJJ_RS00815 at 155.419 kb on - strand, within MMJJ_RS00815 at 155.422 kb on + strand, within MMJJ_RS00815 at 155.467 kb on - strand, within MMJJ_RS00815 at 155.519 kb on - strand, within MMJJ_RS00815 at 155.520 kb on + strand, within MMJJ_RS00815 at 155.523 kb on - strand, within MMJJ_RS00815 at 155.524 kb on + strand, within MMJJ_RS00815 at 155.579 kb on + strand, within MMJJ_RS00815 at 155.782 kb on - strand, within MMJJ_RS00815 at 155.810 kb on - strand, within MMJJ_RS00815 at 155.820 kb on + strand, within MMJJ_RS00815 at 155.830 kb on - strand, within MMJJ_RS00815 at 155.831 kb on + strand, within MMJJ_RS00815 at 155.896 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.999 kb on + strand, within MMJJ_RS00815 at 156.013 kb on + strand, within MMJJ_RS00815 at 156.041 kb on - strand, within MMJJ_RS00815 at 156.093 kb on - strand, within MMJJ_RS00815 at 156.105 kb on + strand, within MMJJ_RS00815 at 156.131 kb on - strand, within MMJJ_RS00815 at 156.135 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.176 kb on - strand, within MMJJ_RS00815 at 156.213 kb on - strand, within MMJJ_RS00815 at 156.214 kb on + strand, within MMJJ_RS00815 at 156.214 kb on + strand, within MMJJ_RS00815 at 156.268 kb on - strand at 156.309 kb on + strand at 156.359 kb on + strand at 156.382 kb on - strand at 156.393 kb on + strand at 156.406 kb on + strand at 156.428 kb on + strand at 156.459 kb on + strand at 156.517 kb on - strand, within MMJJ_RS00820 at 156.518 kb on + strand, within MMJJ_RS00820 at 156.617 kb on - strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.650 kb on - strand, within MMJJ_RS00820 at 156.651 kb on + strand, within MMJJ_RS00820 at 156.665 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.768 kb on - strand, within MMJJ_RS00820 at 156.769 kb on + strand, within MMJJ_RS00820 at 156.861 kb on + strand, within MMJJ_RS00820 at 156.937 kb on - strand, within MMJJ_RS00820 at 156.938 kb on + strand, within MMJJ_RS00820 at 156.947 kb on + strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.949 kb on + strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.952 kb on + strand, within MMJJ_RS00820 at 156.982 kb on - strand, within MMJJ_RS00820 at 156.986 kb on + strand, within MMJJ_RS00820 at 157.047 kb on + strand, within MMJJ_RS00820 at 157.139 kb on + strand, within MMJJ_RS00820 at 157.153 kb on - strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.199 kb on - strand, within MMJJ_RS00820 at 157.200 kb on + strand, within MMJJ_RS00820 at 157.224 kb on - strand, within MMJJ_RS00820 at 157.225 kb on + strand, within MMJJ_RS00820 at 157.261 kb on - strand, within MMJJ_RS00820 at 157.307 kb on - strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.336 kb on - strand at 157.336 kb on - strand at 157.364 kb on - strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.464 kb on + strand at 157.481 kb on - strand at 157.520 kb on + strand at 157.555 kb on - strand at 157.556 kb on + strand at 157.565 kb on + strand at 157.581 kb on - strand at 157.585 kb on - strand at 157.586 kb on + strand at 157.659 kb on + strand at 157.662 kb on - strand at 157.663 kb on + strand at 157.663 kb on + strand at 157.663 kb on + strand at 157.668 kb on - strand, within MMJJ_RS00825 at 157.669 kb on + strand, within MMJJ_RS00825 at 157.669 kb on + strand, within MMJJ_RS00825 at 157.737 kb on + strand, within MMJJ_RS00825 at 157.779 kb on + strand, within MMJJ_RS00825 at 157.808 kb on - strand, within MMJJ_RS00825 at 157.879 kb on + strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.934 kb on - strand, within MMJJ_RS00825 at 157.959 kb on - strand, within MMJJ_RS00825 at 157.980 kb on - strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.020 kb on + strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.052 kb on + strand, within MMJJ_RS00825 at 158.054 kb on - strand, within MMJJ_RS00825 at 158.106 kb on - strand, within MMJJ_RS00825 at 158.126 kb on - strand, within MMJJ_RS00825 at 158.223 kb on + strand, within MMJJ_RS00825 at 158.289 kb on + strand, within MMJJ_RS00825 at 158.316 kb on - strand, within MMJJ_RS00825 at 158.322 kb on + strand, within MMJJ_RS00825 at 158.344 kb on + strand, within MMJJ_RS00825 at 158.372 kb on - strand, within MMJJ_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine remove 155,419 - MMJJ_RS00815 0.45 +0.3 155,419 - MMJJ_RS00815 0.45 -0.9 155,422 + MMJJ_RS00815 0.45 -0.3 155,467 - MMJJ_RS00815 0.47 -0.1 155,519 - MMJJ_RS00815 0.50 +0.6 155,520 + MMJJ_RS00815 0.50 +0.2 155,523 - MMJJ_RS00815 0.50 -0.9 155,524 + MMJJ_RS00815 0.51 -1.9 155,579 + MMJJ_RS00815 0.54 -0.5 155,782 - MMJJ_RS00815 0.65 +1.1 155,810 - MMJJ_RS00815 0.67 +0.3 155,820 + MMJJ_RS00815 0.67 +1.0 155,830 - MMJJ_RS00815 0.68 -2.2 155,831 + MMJJ_RS00815 0.68 -1.0 155,896 - MMJJ_RS00815 0.71 -0.6 155,954 - MMJJ_RS00815 0.75 -0.6 155,954 - MMJJ_RS00815 0.75 +0.5 155,954 - MMJJ_RS00815 0.75 -1.5 155,999 + MMJJ_RS00815 0.77 +0.7 156,013 + MMJJ_RS00815 0.78 -0.4 156,041 - MMJJ_RS00815 0.80 -0.3 156,093 - MMJJ_RS00815 0.83 +0.5 156,105 + MMJJ_RS00815 0.83 +0.4 156,131 - MMJJ_RS00815 0.85 +0.3 156,135 + MMJJ_RS00815 0.85 -0.6 156,167 + MMJJ_RS00815 0.87 +0.4 156,167 + MMJJ_RS00815 0.87 +0.4 156,167 + MMJJ_RS00815 0.87 -0.9 156,176 - MMJJ_RS00815 0.87 -2.2 156,213 - MMJJ_RS00815 0.89 -0.1 156,214 + MMJJ_RS00815 0.89 -0.5 156,214 + MMJJ_RS00815 0.89 -0.6 156,268 - -1.4 156,309 + -1.1 156,359 + +0.4 156,382 - +1.1 156,393 + +1.2 156,406 + +0.5 156,428 + -0.1 156,459 + +0.6 156,517 - MMJJ_RS00820 0.11 +1.2 156,518 + MMJJ_RS00820 0.11 +1.1 156,617 - MMJJ_RS00820 0.21 -0.8 156,618 + MMJJ_RS00820 0.21 +0.4 156,618 + MMJJ_RS00820 0.21 +0.9 156,634 - MMJJ_RS00820 0.22 +0.1 156,634 - MMJJ_RS00820 0.22 +0.2 156,650 - MMJJ_RS00820 0.24 +0.7 156,651 + MMJJ_RS00820 0.24 -1.8 156,665 - MMJJ_RS00820 0.25 +5.2 156,674 - MMJJ_RS00820 0.26 +1.0 156,674 - MMJJ_RS00820 0.26 -1.3 156,766 - MMJJ_RS00820 0.35 +0.6 156,766 - MMJJ_RS00820 0.35 -0.0 156,766 - MMJJ_RS00820 0.35 -0.8 156,768 - MMJJ_RS00820 0.35 -0.5 156,769 + MMJJ_RS00820 0.35 -0.2 156,861 + MMJJ_RS00820 0.44 +1.1 156,937 - MMJJ_RS00820 0.52 -1.9 156,938 + MMJJ_RS00820 0.52 +0.5 156,947 + MMJJ_RS00820 0.53 -0.3 156,948 - MMJJ_RS00820 0.53 +0.0 156,948 - MMJJ_RS00820 0.53 +0.5 156,949 + MMJJ_RS00820 0.53 +1.7 156,951 - MMJJ_RS00820 0.53 +0.2 156,951 - MMJJ_RS00820 0.53 +2.3 156,952 + MMJJ_RS00820 0.53 +1.9 156,982 - MMJJ_RS00820 0.56 -0.0 156,986 + MMJJ_RS00820 0.57 +0.9 157,047 + MMJJ_RS00820 0.62 +0.5 157,139 + MMJJ_RS00820 0.71 +0.2 157,153 - MMJJ_RS00820 0.73 +0.5 157,154 + MMJJ_RS00820 0.73 -0.4 157,154 + MMJJ_RS00820 0.73 +0.4 157,156 - MMJJ_RS00820 0.73 -1.1 157,156 - MMJJ_RS00820 0.73 -0.5 157,199 - MMJJ_RS00820 0.77 +0.1 157,200 + MMJJ_RS00820 0.77 -0.0 157,224 - MMJJ_RS00820 0.80 -0.4 157,225 + MMJJ_RS00820 0.80 -0.3 157,261 - MMJJ_RS00820 0.83 +1.1 157,307 - MMJJ_RS00820 0.88 -0.1 157,308 + MMJJ_RS00820 0.88 -2.9 157,308 + MMJJ_RS00820 0.88 -0.4 157,336 - +0.3 157,336 - +0.1 157,364 - -0.5 157,365 + -0.1 157,365 + -1.1 157,464 + +0.1 157,481 - +0.1 157,520 + -0.1 157,555 - -0.6 157,556 + -0.3 157,565 + +0.6 157,581 - +0.3 157,585 - +0.0 157,586 + +0.6 157,659 + +0.4 157,662 - +0.1 157,663 + -1.1 157,663 + +0.5 157,663 + -1.2 157,668 - MMJJ_RS00825 0.10 +0.4 157,669 + MMJJ_RS00825 0.11 -0.1 157,669 + MMJJ_RS00825 0.11 +0.8 157,737 + MMJJ_RS00825 0.17 -1.0 157,779 + MMJJ_RS00825 0.21 +0.6 157,808 - MMJJ_RS00825 0.23 +1.1 157,879 + MMJJ_RS00825 0.30 +0.6 157,932 - MMJJ_RS00825 0.35 -1.1 157,932 - MMJJ_RS00825 0.35 +1.5 157,932 - MMJJ_RS00825 0.35 -1.0 157,934 - MMJJ_RS00825 0.35 -0.8 157,959 - MMJJ_RS00825 0.37 -1.3 157,980 - MMJJ_RS00825 0.39 +1.1 157,981 + MMJJ_RS00825 0.39 +0.5 157,981 + MMJJ_RS00825 0.39 -0.5 158,019 - MMJJ_RS00825 0.43 +0.8 158,019 - MMJJ_RS00825 0.43 +1.6 158,020 + MMJJ_RS00825 0.43 -0.1 158,027 - MMJJ_RS00825 0.43 +0.9 158,027 - MMJJ_RS00825 0.43 -0.3 158,027 - MMJJ_RS00825 0.43 +0.2 158,027 - MMJJ_RS00825 0.43 +0.2 158,027 - MMJJ_RS00825 0.43 +4.0 158,028 + MMJJ_RS00825 0.43 -0.2 158,028 + MMJJ_RS00825 0.43 +0.0 158,028 + MMJJ_RS00825 0.43 -1.1 158,051 - MMJJ_RS00825 0.46 -0.3 158,051 - MMJJ_RS00825 0.46 -1.1 158,052 + MMJJ_RS00825 0.46 +0.3 158,054 - MMJJ_RS00825 0.46 +0.3 158,106 - MMJJ_RS00825 0.51 +0.5 158,126 - MMJJ_RS00825 0.52 +0.5 158,223 + MMJJ_RS00825 0.61 +0.7 158,289 + MMJJ_RS00825 0.67 +0.3 158,316 - MMJJ_RS00825 0.70 +0.4 158,322 + MMJJ_RS00825 0.70 +0.8 158,344 + MMJJ_RS00825 0.72 +0.2 158,372 - MMJJ_RS00825 0.75 +0.4
Or see this region's nucleotide sequence