Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00715

Experiment: H2 N-free with 10mM D-glucosamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM D-glucosamine
138,272	-		MMJJ_RS00705	0.84	-2.1
138,403	+				-1.0
138,420	-				-0.1
138,420	-				-0.6
138,420	-				-1.2
138,420	-				-2.3
138,421	+				-1.1
138,421	+				-2.8
138,421	+				-1.7
138,421	+				-0.8
138,421	+				-2.3
138,421	+				-3.0
138,422	-				-1.3
138,422	-				-3.4
138,422	-				-2.3
138,422	-				-2.1
138,422	-				-0.8
138,423	+				-2.1
138,423	+				-2.8
138,423	+				-1.9
138,423	+				-0.9
138,424	-				-1.0
138,424	-				-2.3
138,424	-				-0.6
138,424	-				-0.8
138,424	-				-1.4
138,424	-				-3.2
138,425	+				-3.0
138,425	+				-2.2
138,425	+				-1.3
138,425	+				-1.4
138,425	+				-1.7
138,425	+				-1.7
138,425	+				-1.6
138,425	+				-0.7
138,425	+				-0.9
138,466	+				-0.2
138,493	+				-0.8
138,499	-				+0.6
138,499	-				-2.2
138,499	-				-3.4
138,499	-				-1.8
138,500	+				+3.6
138,500	+				-0.7
138,500	+				-2.0
138,504	-				-1.3
138,508	-				-2.0
138,511	-				-1.3
138,514	+				-1.3
138,652	-				+1.0
138,653	+				+0.4
138,653	+				+3.9
138,657	-				+2.0
138,657	-				-1.1
138,667	-				-0.9
138,672	-				+0.1
138,672	-				-0.6
138,672	-				+0.4
138,672	-				-1.9
138,672	-				+0.9
138,673	+				-0.2
138,673	+				-0.6
138,675	-				+0.2
138,681	-				-0.5
138,684	-				-0.1
138,684	-				+0.3
138,685	+				-0.5
138,693	-				-1.4
138,695	-				+0.7
138,695	-				-1.3
138,715	-				-0.4
138,715	-				+0.7
138,715	-				-0.0
138,716	+				+0.6
138,716	+				-1.0
138,716	+				-0.1
138,719	+				-0.7
138,719	+				-0.7
138,724	+				+0.4
138,795	-				-1.2
138,795	-				-0.2
138,795	-				+0.5
138,801	-		MMJJ_RS00710	0.10	+0.3
138,814	-		MMJJ_RS00710	0.13	+0.0
138,814	-		MMJJ_RS00710	0.13	+0.7
138,814	-		MMJJ_RS00710	0.13	+0.8
138,814	-		MMJJ_RS00710	0.13	+0.1
138,814	-		MMJJ_RS00710	0.13	-3.3
138,815	+		MMJJ_RS00710	0.13	-2.0
138,815	+		MMJJ_RS00710	0.13	+0.2
138,851	-		MMJJ_RS00710	0.21	-0.5
138,867	-				+0.4
138,867	-		MMJJ_RS00710	0.24	-0.6
138,868	+		MMJJ_RS00710	0.24	+1.2
138,868	+		MMJJ_RS00710	0.24	+0.3
138,868	+		MMJJ_RS00710	0.24	-0.8
138,873	-		MMJJ_RS00710	0.25	-0.0
138,874	+		MMJJ_RS00710	0.25	-0.6
138,874	+		MMJJ_RS00710	0.25	-0.1
138,874	+		MMJJ_RS00710	0.25	-0.5
138,874	+		MMJJ_RS00710	0.25	-1.0
138,919	-		MMJJ_RS00710	0.35	-0.5
138,947	-		MMJJ_RS00710	0.41	-0.9
138,947	-		MMJJ_RS00710	0.41	+0.4
138,952	+		MMJJ_RS00710	0.42	+0.0
138,982	-		MMJJ_RS00710	0.48	+0.8
138,982	-		MMJJ_RS00710	0.48	+0.0
138,983	+		MMJJ_RS00710	0.48	+0.3
139,001	+		MMJJ_RS00710	0.52	-0.0
139,078	+		MMJJ_RS00710	0.68	-0.1
139,082	+		MMJJ_RS00710	0.69	-0.2
139,096	+		MMJJ_RS00710	0.72	+0.1
139,151	+		MMJJ_RS00710	0.83	+0.8
139,151	+		MMJJ_RS00710	0.83	+0.3
139,152	-		MMJJ_RS00710	0.83	+1.7
139,153	+		MMJJ_RS00710	0.84	-0.9
139,153	+		MMJJ_RS00710	0.84	-0.2
139,156	-		MMJJ_RS00710	0.84	+0.3
139,157	+		MMJJ_RS00710	0.84	+0.7
139,172	-		MMJJ_RS00710	0.88	-1.0
139,172	-		MMJJ_RS00710	0.88	-2.7
139,172	-		MMJJ_RS00710	0.88	-1.4
139,172	-		MMJJ_RS00710	0.88	-0.3
139,173	+		MMJJ_RS00710	0.88	-0.2
139,173	+		MMJJ_RS00710	0.88	+0.0
139,186	+				-0.1
139,201	-				+1.0
139,201	-				-0.4
139,202	+				+0.0
139,203	-				-0.7
139,203	-				-0.4
139,203	-				-0.7
139,203	-				-1.1
139,203	-				-0.5
139,204	+				-0.1
139,204	+				+0.6
139,204	+				-0.7
139,204	+				-0.7
139,262	-				+1.4
139,262	-				-0.4
139,262	-				+1.0
139,263	+				+0.3
139,263	+				-0.7
139,263	+				+0.1
139,265	-				+0.2
139,265	-				-0.3
139,371	+		MMJJ_RS00715	0.18	+0.4
139,374	-		MMJJ_RS00715	0.18	-0.1
139,375	+		MMJJ_RS00715	0.18	-1.0
139,402	-		MMJJ_RS00715	0.23	-0.5
139,435	-		MMJJ_RS00715	0.28	-0.3
139,436	+		MMJJ_RS00715	0.28	-0.6
139,459	-		MMJJ_RS00715	0.32	-1.3
139,460	+		MMJJ_RS00715	0.32	-1.1
139,460	+		MMJJ_RS00715	0.32	+0.2
139,460	+		MMJJ_RS00715	0.32	-0.7
139,484	-		MMJJ_RS00715	0.36	-1.0
139,485	+		MMJJ_RS00715	0.36	-1.4
139,549	+		MMJJ_RS00715	0.46	-0.5
139,589	+		MMJJ_RS00715	0.52	-1.1
139,600	-		MMJJ_RS00715	0.54	-0.4
139,690	+		MMJJ_RS00715	0.68	+0.6
139,717	+		MMJJ_RS00715	0.73	-0.0
139,720	-		MMJJ_RS00715	0.73	-0.3
139,723	-		MMJJ_RS00715	0.74	-0.4
139,723	-		MMJJ_RS00715	0.74	+0.6
139,726	+		MMJJ_RS00715	0.74	-0.8
139,755	-		MMJJ_RS00715	0.79	-0.6
139,756	+		MMJJ_RS00715	0.79	-0.2
139,762	+		MMJJ_RS00715	0.80	-0.2
139,767	+		MMJJ_RS00715	0.81	-1.3
139,789	+		MMJJ_RS00715	0.84	-0.2
139,789	+		MMJJ_RS00715	0.84	-1.6
139,841	+				+0.6
139,849	-				-0.7
139,854	+				+0.1
139,856	-				+0.2
139,859	+				-1.0
139,879	-				+0.8
139,919	+				+0.4
139,924	+				+0.6
139,936	+				-1.2
139,942	-				-1.3
139,946	-				+1.2
139,946	-				-0.0
139,946	-				-0.2
139,962	+				-0.4
139,963	-				-0.1
139,963	-				-0.8
139,964	+				-0.3
139,964	+				+0.1
140,001	-				+0.3
140,001	-				-0.5
140,002	+				-1.0
140,002	+				+0.3
140,002	+				+0.6
140,022	-				+0.0
140,056	+		MMJJ_RS00720	0.10	+0.5
140,118	-		MMJJ_RS00720	0.15	-1.6
140,118	-		MMJJ_RS00720	0.15	-0.3
140,119	+		MMJJ_RS00720	0.15	-0.8
140,120	-		MMJJ_RS00720	0.15	-0.3
140,249	-		MMJJ_RS00720	0.26	+0.3
140,280	-		MMJJ_RS00720	0.28	-0.4
140,280	-		MMJJ_RS00720	0.28	+0.3
140,281	+		MMJJ_RS00720	0.28	-0.2
140,307	-		MMJJ_RS00720	0.30	-1.1
140,342	-		MMJJ_RS00720	0.33	+2.0
140,343	+		MMJJ_RS00720	0.33	-0.6
140,343	+		MMJJ_RS00720	0.33	-1.2
140,347	+		MMJJ_RS00720	0.33	-1.1
140,364	+		MMJJ_RS00720	0.35	+0.1
140,364	+		MMJJ_RS00720	0.35	+0.9
140,364	+		MMJJ_RS00720	0.35	+1.2
140,364	+		MMJJ_RS00720	0.35	-0.3
140,366	-		MMJJ_RS00720	0.35	+1.1
140,366	-		MMJJ_RS00720	0.35	-0.1
140,366	-		MMJJ_RS00720	0.35	-0.2
140,366	-		MMJJ_RS00720	0.35	-0.4
140,366	-		MMJJ_RS00720	0.35	-1.1
140,376	-		MMJJ_RS00720	0.36	-1.3
140,376	-		MMJJ_RS00720	0.36	-0.5
140,376	-		MMJJ_RS00720	0.36	-0.7
140,377	+		MMJJ_RS00720	0.36	-0.7
140,378	-		MMJJ_RS00720	0.36	+0.2
140,378	-		MMJJ_RS00720	0.36	+1.1
140,381	-		MMJJ_RS00720	0.36	+0.4
140,382	+		MMJJ_RS00720	0.36	-0.7
140,408	+		MMJJ_RS00720	0.38	-0.6
140,408	+		MMJJ_RS00720	0.38	+0.3
140,410	+		MMJJ_RS00720	0.38	+0.2
140,412	-		MMJJ_RS00720	0.39	+0.6
140,412	-		MMJJ_RS00720	0.39	-0.9
140,412	-		MMJJ_RS00720	0.39	+0.8
140,412	-		MMJJ_RS00720	0.39	-0.8
140,413	+		MMJJ_RS00720	0.39	-0.6
140,413	+		MMJJ_RS00720	0.39	-1.6
140,439	-		MMJJ_RS00720	0.41	+1.2
140,439	-		MMJJ_RS00720	0.41	+0.2
140,440	+		MMJJ_RS00720	0.41	-0.6
140,459	-		MMJJ_RS00720	0.42	+0.2
140,484	-		MMJJ_RS00720	0.44	-0.9
140,484	-		MMJJ_RS00720	0.44	-0.3
140,485	+		MMJJ_RS00720	0.44	-1.0
140,494	-		MMJJ_RS00720	0.45	-0.3
140,494	-		MMJJ_RS00720	0.45	-0.5
140,499	-		MMJJ_RS00720	0.45	-0.1
140,499	-		MMJJ_RS00720	0.45	-1.1
140,499	-		MMJJ_RS00720	0.45	-0.3
140,499	-		MMJJ_RS00720	0.45	+0.4
140,514	-		MMJJ_RS00720	0.47	+0.1
140,514	-		MMJJ_RS00720	0.47	-0.2
140,514	-		MMJJ_RS00720	0.47	-0.8
140,514	-		MMJJ_RS00720	0.47	-0.5
140,515	+		MMJJ_RS00720	0.47	+0.8
140,520	-		MMJJ_RS00720	0.47	-0.7
140,523	-		MMJJ_RS00720	0.47	+0.0
140,524	+		MMJJ_RS00720	0.47	+0.4
140,524	+		MMJJ_RS00720	0.47	-0.2
140,598	+		MMJJ_RS00720	0.53	+1.0
140,632	+		MMJJ_RS00720	0.56	-3.1
140,632	+		MMJJ_RS00720	0.56	+1.3
140,632	+		MMJJ_RS00720	0.56	-0.5
140,632	+		MMJJ_RS00720	0.56	-0.5
140,632	+		MMJJ_RS00720	0.56	+1.3
140,642	-		MMJJ_RS00720	0.57	-0.2
140,643	+		MMJJ_RS00720	0.57	+0.5
140,709	-		MMJJ_RS00720	0.62	-0.1
140,709	-		MMJJ_RS00720	0.62	+0.2
140,715	-		MMJJ_RS00720	0.63	-0.0
140,715	-		MMJJ_RS00720	0.63	+0.9
140,738	-		MMJJ_RS00720	0.65	+1.0
140,753	-		MMJJ_RS00720	0.66	-1.4
140,848	+		MMJJ_RS00720	0.73	-0.8
140,848	+		MMJJ_RS00720	0.73	-0.1
140,887	+		MMJJ_RS00720	0.76	-0.5