Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08070

Experiment: R2A with beryllium sulfate tetrahydrate 1.953125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08065 and LRK54_RS08070 are separated by 120 nucleotidesLRK54_RS08070 and LRK54_RS08075 are separated by 238 nucleotidesLRK54_RS08075 and LRK54_RS08080 are separated by 13 nucleotides LRK54_RS08065: LRK54_RS08065 - ATP-binding protein, at 1,766,719 to 1,768,092 _RS08065 LRK54_RS08070: LRK54_RS08070 - hypothetical protein, at 1,768,213 to 1,768,428 _RS08070 LRK54_RS08075: LRK54_RS08075 - hypothetical protein, at 1,768,667 to 1,769,197 _RS08075 LRK54_RS08080: LRK54_RS08080 - GMC family oxidoreductase, at 1,769,211 to 1,770,854 _RS08080 Position (kb) 1768 1769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1767.258 kb on + strand, within LRK54_RS08065at 1767.259 kb on - strand, within LRK54_RS08065at 1767.271 kb on + strand, within LRK54_RS08065at 1767.272 kb on - strand, within LRK54_RS08065at 1767.272 kb on - strand, within LRK54_RS08065at 1767.272 kb on - strand, within LRK54_RS08065at 1767.272 kb on - strand, within LRK54_RS08065at 1767.347 kb on + strand, within LRK54_RS08065at 1767.468 kb on + strand, within LRK54_RS08065at 1767.468 kb on + strand, within LRK54_RS08065at 1767.468 kb on + strand, within LRK54_RS08065at 1767.468 kb on + strand, within LRK54_RS08065at 1767.468 kb on + strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.469 kb on - strand, within LRK54_RS08065at 1767.585 kb on + strand, within LRK54_RS08065at 1767.585 kb on + strand, within LRK54_RS08065at 1767.585 kb on + strand, within LRK54_RS08065at 1767.586 kb on - strand, within LRK54_RS08065at 1767.702 kb on - strand, within LRK54_RS08065at 1767.839 kb on + strand, within LRK54_RS08065at 1767.839 kb on + strand, within LRK54_RS08065at 1767.839 kb on + strand, within LRK54_RS08065at 1767.839 kb on + strand, within LRK54_RS08065at 1767.839 kb on + strand, within LRK54_RS08065at 1767.840 kb on - strand, within LRK54_RS08065at 1767.840 kb on - strand, within LRK54_RS08065at 1767.840 kb on - strand, within LRK54_RS08065at 1767.840 kb on - strand, within LRK54_RS08065at 1767.840 kb on - strand, within LRK54_RS08065at 1767.929 kb on + strand, within LRK54_RS08065at 1767.929 kb on + strand, within LRK54_RS08065at 1767.929 kb on + strand, within LRK54_RS08065at 1767.929 kb on + strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1767.930 kb on - strand, within LRK54_RS08065at 1768.031 kb on + strandat 1768.032 kb on - strandat 1768.032 kb on - strandat 1768.090 kb on + strandat 1768.090 kb on + strandat 1768.091 kb on - strandat 1768.091 kb on - strandat 1768.091 kb on - strandat 1768.166 kb on + strandat 1768.167 kb on - strandat 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.250 kb on + strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.251 kb on - strand, within LRK54_RS08070at 1768.451 kb on + strandat 1768.451 kb on + strandat 1768.451 kb on + strandat 1768.451 kb on + strandat 1768.451 kb on + strandat 1768.452 kb on - strandat 1768.519 kb on + strandat 1768.519 kb on + strandat 1768.520 kb on - strandat 1768.520 kb on - strandat 1768.589 kb on - strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.597 kb on + strandat 1768.598 kb on - strandat 1768.598 kb on - strandat 1768.598 kb on - strandat 1768.598 kb on - strandat 1768.760 kb on + strand, within LRK54_RS08075at 1768.760 kb on + strand, within LRK54_RS08075at 1768.760 kb on + strand, within LRK54_RS08075at 1768.760 kb on + strand, within LRK54_RS08075at 1768.760 kb on + strand, within LRK54_RS08075at 1768.761 kb on - strand, within LRK54_RS08075at 1768.761 kb on - strand, within LRK54_RS08075at 1768.761 kb on - strand, within LRK54_RS08075at 1768.761 kb on - strand, within LRK54_RS08075at 1768.889 kb on + strand, within LRK54_RS08075at 1768.889 kb on + strand, within LRK54_RS08075at 1768.889 kb on + strand, within LRK54_RS08075at 1768.890 kb on - strand, within LRK54_RS08075at 1768.890 kb on - strand, within LRK54_RS08075at 1768.890 kb on - strand, within LRK54_RS08075at 1769.096 kb on + strand, within LRK54_RS08075at 1769.097 kb on - strand, within LRK54_RS08075at 1769.097 kb on - strand, within LRK54_RS08075at 1769.156 kb on + strandat 1769.165 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with beryllium sulfate tetrahydrate 1.953125 mM
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1,767,258 + LRK54_RS08065 0.39 -0.3
1,767,259 - LRK54_RS08065 0.39 +0.6
1,767,271 + LRK54_RS08065 0.40 +0.3
1,767,272 - LRK54_RS08065 0.40 +1.1
1,767,272 - LRK54_RS08065 0.40 -2.1
1,767,272 - LRK54_RS08065 0.40 +0.3
1,767,272 - LRK54_RS08065 0.40 +0.6
1,767,347 + LRK54_RS08065 0.46 +0.0
1,767,468 + LRK54_RS08065 0.55 -1.5
1,767,468 + LRK54_RS08065 0.55 -0.4
1,767,468 + LRK54_RS08065 0.55 -2.5
1,767,468 + LRK54_RS08065 0.55 -0.4
1,767,468 + LRK54_RS08065 0.55 -1.2
1,767,469 - LRK54_RS08065 0.55 -2.4
1,767,469 - LRK54_RS08065 0.55 +0.1
1,767,469 - LRK54_RS08065 0.55 -0.8
1,767,469 - LRK54_RS08065 0.55 +0.3
1,767,469 - LRK54_RS08065 0.55 -1.2
1,767,469 - LRK54_RS08065 0.55 -0.5
1,767,469 - LRK54_RS08065 0.55 -0.5
1,767,469 - LRK54_RS08065 0.55 -0.7
1,767,585 + LRK54_RS08065 0.63 +2.3
1,767,585 + LRK54_RS08065 0.63 -0.1
1,767,585 + LRK54_RS08065 0.63 +0.5
1,767,586 - LRK54_RS08065 0.63 -0.5
1,767,702 - LRK54_RS08065 0.72 -0.2
1,767,839 + LRK54_RS08065 0.82 -1.3
1,767,839 + LRK54_RS08065 0.82 -0.5
1,767,839 + LRK54_RS08065 0.82 -0.5
1,767,839 + LRK54_RS08065 0.82 -2.8
1,767,839 + LRK54_RS08065 0.82 -0.3
1,767,840 - LRK54_RS08065 0.82 -0.5
1,767,840 - LRK54_RS08065 0.82 +0.7
1,767,840 - LRK54_RS08065 0.82 -1.3
1,767,840 - LRK54_RS08065 0.82 -0.6
1,767,840 - LRK54_RS08065 0.82 +1.4
1,767,929 + LRK54_RS08065 0.88 -0.1
1,767,929 + LRK54_RS08065 0.88 +0.5
1,767,929 + LRK54_RS08065 0.88 +1.9
1,767,929 + LRK54_RS08065 0.88 -1.6
1,767,930 - LRK54_RS08065 0.88 +0.4
1,767,930 - LRK54_RS08065 0.88 +0.4
1,767,930 - LRK54_RS08065 0.88 +0.1
1,767,930 - LRK54_RS08065 0.88 -1.5
1,767,930 - LRK54_RS08065 0.88 +1.1
1,767,930 - LRK54_RS08065 0.88 -0.7
1,768,031 + +0.9
1,768,032 - +0.5
1,768,032 - -0.8
1,768,090 + -0.4
1,768,090 + -0.6
1,768,091 - -2.3
1,768,091 - -0.3
1,768,091 - +0.4
1,768,166 + -1.6
1,768,167 - +0.4
1,768,250 + LRK54_RS08070 0.17 -0.3
1,768,250 + LRK54_RS08070 0.17 -1.6
1,768,250 + LRK54_RS08070 0.17 +0.4
1,768,250 + LRK54_RS08070 0.17 -0.5
1,768,250 + LRK54_RS08070 0.17 -1.6
1,768,250 + LRK54_RS08070 0.17 -0.8
1,768,250 + LRK54_RS08070 0.17 +0.3
1,768,250 + LRK54_RS08070 0.17 +0.5
1,768,250 + LRK54_RS08070 0.17 -0.3
1,768,250 + LRK54_RS08070 0.17 -2.3
1,768,250 + LRK54_RS08070 0.17 -1.1
1,768,250 + LRK54_RS08070 0.17 -2.9
1,768,250 + LRK54_RS08070 0.17 +0.6
1,768,250 + LRK54_RS08070 0.17 -0.3
1,768,251 - LRK54_RS08070 0.18 -1.4
1,768,251 - LRK54_RS08070 0.18 -0.3
1,768,251 - LRK54_RS08070 0.18 +0.6
1,768,251 - LRK54_RS08070 0.18 -1.5
1,768,251 - LRK54_RS08070 0.18 -1.1
1,768,251 - LRK54_RS08070 0.18 -0.1
1,768,251 - LRK54_RS08070 0.18 -0.5
1,768,251 - LRK54_RS08070 0.18 -0.6
1,768,251 - LRK54_RS08070 0.18 -0.7
1,768,251 - LRK54_RS08070 0.18 -1.3
1,768,251 - LRK54_RS08070 0.18 -1.1
1,768,251 - LRK54_RS08070 0.18 +0.6
1,768,251 - LRK54_RS08070 0.18 -0.4
1,768,251 - LRK54_RS08070 0.18 -0.6
1,768,251 - LRK54_RS08070 0.18 +0.3
1,768,251 - LRK54_RS08070 0.18 +0.3
1,768,251 - LRK54_RS08070 0.18 -1.4
1,768,251 - LRK54_RS08070 0.18 -2.1
1,768,251 - LRK54_RS08070 0.18 -0.4
1,768,251 - LRK54_RS08070 0.18 -0.5
1,768,251 - LRK54_RS08070 0.18 -0.0
1,768,451 + -0.6
1,768,451 + +0.4
1,768,451 + +1.0
1,768,451 + +0.4
1,768,451 + -0.4
1,768,452 - +0.1
1,768,519 + +0.4
1,768,519 + -0.5
1,768,520 - +0.1
1,768,520 - -1.4
1,768,589 - -0.0
1,768,597 + +0.7
1,768,597 + -1.5
1,768,597 + +1.2
1,768,597 + -0.4
1,768,597 + -0.6
1,768,597 + -1.9
1,768,597 + -1.5
1,768,597 + -0.1
1,768,597 + -0.1
1,768,597 + -0.2
1,768,598 - +0.0
1,768,598 - +0.3
1,768,598 - -0.1
1,768,598 - -0.4
1,768,760 + LRK54_RS08075 0.18 -0.3
1,768,760 + LRK54_RS08075 0.18 -1.1
1,768,760 + LRK54_RS08075 0.18 -0.7
1,768,760 + LRK54_RS08075 0.18 +0.2
1,768,760 + LRK54_RS08075 0.18 -0.5
1,768,761 - LRK54_RS08075 0.18 +0.4
1,768,761 - LRK54_RS08075 0.18 +3.7
1,768,761 - LRK54_RS08075 0.18 +0.8
1,768,761 - LRK54_RS08075 0.18 -0.5
1,768,889 + LRK54_RS08075 0.42 -0.3
1,768,889 + LRK54_RS08075 0.42 -0.1
1,768,889 + LRK54_RS08075 0.42 -0.5
1,768,890 - LRK54_RS08075 0.42 -0.9
1,768,890 - LRK54_RS08075 0.42 +0.1
1,768,890 - LRK54_RS08075 0.42 -0.6
1,769,096 + LRK54_RS08075 0.81 -1.5
1,769,097 - LRK54_RS08075 0.81 -0.3
1,769,097 - LRK54_RS08075 0.81 -0.0
1,769,156 + -0.1
1,769,165 + -0.4

Or see this region's nucleotide sequence