Strain Fitness in Pantoea sp. MT58 around IAI47_18640

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
3,974,315	+				-1.4
3,974,315	+				-1.1
3,974,315	+				+0.2
3,974,315	+				+1.1
3,974,315	+				-2.4
3,974,315	+				-1.5
3,974,315	+				-1.8
3,974,315	+				-0.9
3,974,315	+				+0.9
3,974,315	+				+0.3
3,974,315	+				+0.5
3,974,315	+				+0.7
3,974,315	+				-1.0
3,974,315	+				-0.0
3,974,316	-				+0.3
3,974,316	-				+0.4
3,974,316	-				-1.9
3,974,316	-				+1.1
3,974,417	+		IAI47_18635	0.11	+0.2
3,974,418	-		IAI47_18635	0.11	-1.3
3,974,459	+		IAI47_18635	0.16	+1.0
3,974,459	+		IAI47_18635	0.16	+0.5
3,974,459	+		IAI47_18635	0.16	-0.6
3,974,459	+		IAI47_18635	0.16	+1.8
3,974,459	+		IAI47_18635	0.16	+0.5
3,974,459	+		IAI47_18635	0.16	+0.4
3,974,459	+		IAI47_18635	0.16	-2.8
3,974,459	+		IAI47_18635	0.16	-0.1
3,974,459	+		IAI47_18635	0.16	-0.3
3,974,459	+		IAI47_18635	0.16	+1.1
3,974,460	-		IAI47_18635	0.16	-1.1
3,974,460	-		IAI47_18635	0.16	-0.8
3,974,460	-		IAI47_18635	0.16	-2.2
3,974,460	-		IAI47_18635	0.16	+0.2
3,974,460	-		IAI47_18635	0.16	+0.5
3,974,460	-		IAI47_18635	0.16	+1.1
3,974,460	-		IAI47_18635	0.16	-0.1
3,974,502	+		IAI47_18635	0.20	+0.3
3,974,502	+		IAI47_18635	0.20	-1.2
3,974,502	+		IAI47_18635	0.20	+1.1
3,974,544	+		IAI47_18635	0.24	+0.3
3,974,544	+		IAI47_18635	0.24	-0.2
3,974,544	+		IAI47_18635	0.24	-1.7
3,974,544	+		IAI47_18635	0.24	-1.4
3,974,544	+		IAI47_18635	0.24	-0.9
3,974,545	-		IAI47_18635	0.24	+2.6
3,974,545	-		IAI47_18635	0.24	+0.0
3,974,545	-		IAI47_18635	0.24	+0.4
3,974,546	+		IAI47_18635	0.24	-0.8
3,974,546	+		IAI47_18635	0.24	-2.7
3,974,546	+		IAI47_18635	0.24	-2.1
3,974,547	-		IAI47_18635	0.25	+0.1
3,974,547	-		IAI47_18635	0.25	-1.2
3,974,571	+		IAI47_18635	0.27	+0.1
3,974,609	+		IAI47_18635	0.31	-0.6
3,974,609	+		IAI47_18635	0.31	-0.6
3,974,609	+		IAI47_18635	0.31	-1.1
3,974,609	+		IAI47_18635	0.31	+0.7
3,974,609	+		IAI47_18635	0.31	-0.2
3,974,609	+		IAI47_18635	0.31	-0.6
3,974,609	+		IAI47_18635	0.31	-0.4
3,974,610	-		IAI47_18635	0.31	-2.0
3,974,610	-		IAI47_18635	0.31	-0.9
3,974,610	-		IAI47_18635	0.31	-1.4
3,974,610	-		IAI47_18635	0.31	+2.4
3,974,610	-		IAI47_18635	0.31	+0.7
3,974,610	-		IAI47_18635	0.31	-0.0
3,974,610	-		IAI47_18635	0.31	+1.4
3,974,610	-		IAI47_18635	0.31	+2.1
3,974,610	-		IAI47_18635	0.31	-0.7
3,974,619	+		IAI47_18635	0.32	-0.1
3,974,661	+		IAI47_18635	0.36	+0.1
3,974,730	+		IAI47_18635	0.43	+0.5
3,974,843	+		IAI47_18635	0.55	-1.5
3,974,843	+		IAI47_18635	0.55	+2.0
3,974,843	+		IAI47_18635	0.55	-2.9
3,974,844	-		IAI47_18635	0.55	-1.0
3,974,844	-		IAI47_18635	0.55	-0.6
3,974,875	-		IAI47_18635	0.58	-0.1
3,974,955	+		IAI47_18635	0.66	+0.3
3,974,955	+		IAI47_18635	0.66	-0.9
3,974,955	+		IAI47_18635	0.66	-0.8
3,974,956	-		IAI47_18635	0.66	-2.0
3,974,975	+		IAI47_18635	0.68	-0.8
3,974,975	+		IAI47_18635	0.68	+1.2
3,974,975	+		IAI47_18635	0.68	+0.5
3,974,976	-		IAI47_18635	0.68	-0.1
3,974,976	-		IAI47_18635	0.68	-1.2
3,974,976	-		IAI47_18635	0.68	-1.1
3,974,976	-		IAI47_18635	0.68	+0.2
3,974,976	-		IAI47_18635	0.68	-2.1
3,975,157	-		IAI47_18635	0.86	+1.1
3,975,203	-				-1.7
3,975,203	-				+0.2
3,975,203	-				-0.5
3,975,203	-				-0.3
3,975,209	+				+0.1
3,975,209	+				-0.1
3,975,210	-				-0.0
3,975,210	-				-2.9
3,975,210	-				-0.3
3,975,210	-				-0.3
3,975,210	-				+0.1
3,975,210	-				-0.1
3,975,210	-				-1.2
3,975,210	-				+0.6
3,975,210	-				-1.9
3,975,243	+				-0.6
3,975,265	+				+0.4
3,975,265	+				+0.1
3,975,265	+				-0.8
3,975,266	-				+1.2
3,975,266	-				-1.1
3,975,266	-				+0.2
3,975,274	+				+0.2
3,975,280	+				+0.1
3,975,280	+				-1.6
3,975,280	+				+0.7
3,975,280	+				+1.0
3,975,280	+				-1.9
3,975,280	+				-0.0
3,975,280	+				+0.3
3,975,281	-				-0.7
3,975,283	+				-0.4
3,975,284	-				-1.5
3,975,306	-				-0.5
3,975,306	-				-1.9
3,975,306	-				+0.3
3,975,306	-				+0.8
3,975,357	+				-1.2
3,975,357	+				-1.6
3,975,357	+				+0.2
3,975,357	+				-0.1
3,975,358	-				+0.2
3,975,358	-				-3.2
3,975,425	+		IAI47_18640	0.13	-0.7
3,975,425	+		IAI47_18640	0.13	-0.7
3,975,426	-		IAI47_18640	0.14	-0.5
3,975,532	+		IAI47_18640	0.25	-0.9
3,975,532	+		IAI47_18640	0.25	-1.7
3,975,532	+		IAI47_18640	0.25	+2.4
3,975,532	+		IAI47_18640	0.25	+0.5
3,975,532	+		IAI47_18640	0.25	+0.1
3,975,532	+		IAI47_18640	0.25	+0.4
3,975,533	-		IAI47_18640	0.25	+0.3
3,975,550	-		IAI47_18640	0.27	-0.8
3,975,567	+		IAI47_18640	0.29	+0.6
3,975,568	-		IAI47_18640	0.29	-0.9
3,975,576	+		IAI47_18640	0.30	-0.9
3,975,576	+		IAI47_18640	0.30	+0.2
3,975,577	-		IAI47_18640	0.30	-0.0
3,975,600	+		IAI47_18640	0.33	+0.1
3,975,632	+		IAI47_18640	0.36	+0.6
3,975,632	+		IAI47_18640	0.36	-0.7
3,975,632	+		IAI47_18640	0.36	-1.5
3,975,632	+		IAI47_18640	0.36	+0.6
3,975,633	-		IAI47_18640	0.36	-0.3
3,975,633	-		IAI47_18640	0.36	-1.3
3,975,633	-		IAI47_18640	0.36	+0.4
3,975,633	-		IAI47_18640	0.36	-0.5
3,975,678	+		IAI47_18640	0.41	+1.6
3,975,678	+		IAI47_18640	0.41	+0.9
3,975,678	+		IAI47_18640	0.41	-0.8
3,975,679	-		IAI47_18640	0.42	-1.6
3,975,679	-		IAI47_18640	0.42	+0.2
3,975,680	+		IAI47_18640	0.42	-1.2
3,975,680	+		IAI47_18640	0.42	-1.3
3,975,680	+		IAI47_18640	0.42	-0.1
3,975,680	+		IAI47_18640	0.42	+1.2
3,975,680	+		IAI47_18640	0.42	+0.1
3,975,680	+		IAI47_18640	0.42	+0.4
3,975,680	+		IAI47_18640	0.42	-0.3
3,975,681	-		IAI47_18640	0.42	-0.2
3,975,681	-		IAI47_18640	0.42	+0.1
3,975,681	-		IAI47_18640	0.42	+0.4
3,975,681	-		IAI47_18640	0.42	-2.8
3,975,681	-		IAI47_18640	0.42	-1.3
3,975,681	-		IAI47_18640	0.42	+0.3
3,975,681	-		IAI47_18640	0.42	-2.5
3,975,681	-		IAI47_18640	0.42	-0.4
3,975,681	-		IAI47_18640	0.42	-1.3
3,975,681	-		IAI47_18640	0.42	+0.6
3,975,681	-		IAI47_18640	0.42	-2.1
3,975,790	-		IAI47_18640	0.54	-0.4
3,975,797	-		IAI47_18640	0.55	-0.1
3,975,833	+		IAI47_18640	0.59	-1.8
3,975,834	-		IAI47_18640	0.59	+1.9
3,975,853	+		IAI47_18640	0.61	+1.1
3,975,853	+		IAI47_18640	0.61	+0.4
3,975,853	+		IAI47_18640	0.61	+0.9
3,975,854	-		IAI47_18640	0.61	-1.1
3,975,920	+		IAI47_18640	0.68	+0.7
3,975,920	+		IAI47_18640	0.68	-0.1
3,975,920	+		IAI47_18640	0.68	+0.3
3,975,920	+		IAI47_18640	0.68	-0.5
3,975,920	+		IAI47_18640	0.68	+0.8
3,975,920	+		IAI47_18640	0.68	-0.7
3,975,920	+		IAI47_18640	0.68	+0.2
3,975,920	+		IAI47_18640	0.68	-0.6
3,975,920	+		IAI47_18640	0.68	-0.3
3,975,920	+		IAI47_18640	0.68	-2.5
3,975,920	+		IAI47_18640	0.68	+0.3
3,975,920	+		IAI47_18640	0.68	+0.2
3,975,920	+		IAI47_18640	0.68	-0.6
3,975,920	+		IAI47_18640	0.68	-1.0
3,975,920	+		IAI47_18640	0.68	+1.7
3,975,921	-		IAI47_18640	0.68	-0.1
3,975,921	-		IAI47_18640	0.68	-0.3
3,975,921	-		IAI47_18640	0.68	+0.9
3,975,921	-		IAI47_18640	0.68	-1.7
3,975,921	-		IAI47_18640	0.68	+0.0
3,975,921	-		IAI47_18640	0.68	+2.0
3,975,921	-		IAI47_18640	0.68	-0.4
3,975,921	-		IAI47_18640	0.68	-1.3
3,975,971	+		IAI47_18640	0.74	-0.6
3,975,971	+		IAI47_18640	0.74	+1.2
3,975,971	+		IAI47_18640	0.74	+0.1
3,975,971	+		IAI47_18640	0.74	+0.5
3,975,972	-		IAI47_18640	0.74	-0.1
3,975,972	-		IAI47_18640	0.74	+0.6
3,975,972	-		IAI47_18640	0.74	-1.9
3,975,972	-		IAI47_18640	0.74	+0.1
3,975,972	-		IAI47_18640	0.74	+0.3
3,976,054	+		IAI47_18640	0.83	-0.2
3,976,054	+		IAI47_18640	0.83	+0.5
3,976,054	+		IAI47_18640	0.83	-0.5
3,976,054	+		IAI47_18640	0.83	-0.9
3,976,054	+		IAI47_18640	0.83	-1.6
3,976,054	+		IAI47_18640	0.83	+0.8
3,976,055	-		IAI47_18640	0.83	-0.2
3,976,055	-		IAI47_18640	0.83	-0.9
3,976,055	-		IAI47_18640	0.83	+0.7
3,976,055	-		IAI47_18640	0.83	+0.5
3,976,055	-		IAI47_18640	0.83	-0.1
3,976,068	+		IAI47_18640	0.85	+0.6
3,976,068	+		IAI47_18640	0.85	+0.5
3,976,069	-		IAI47_18640	0.85	-0.1
3,976,081	+		IAI47_18640	0.86	+1.6
3,976,081	+		IAI47_18640	0.86	-0.9
3,976,081	+		IAI47_18640	0.86	-0.1
3,976,081	+		IAI47_18640	0.86	-2.2
3,976,081	+		IAI47_18640	0.86	-0.6
3,976,081	+		IAI47_18640	0.86	+0.9
3,976,081	+		IAI47_18640	0.86	+0.2
3,976,082	-		IAI47_18640	0.86	-1.4
3,976,082	-		IAI47_18640	0.86	+5.5
3,976,082	-		IAI47_18640	0.86	-0.3
3,976,082	-		IAI47_18640	0.86	-1.8
3,976,082	-		IAI47_18640	0.86	+1.6
3,976,082	-		IAI47_18640	0.86	+0.6
3,976,082	-		IAI47_18640	0.86	+1.0
3,976,082	-		IAI47_18640	0.86	+0.1
3,976,094	+		IAI47_18640	0.87	-0.4
3,976,094	+		IAI47_18640	0.87	+0.6
3,976,094	+		IAI47_18640	0.87	+0.0
3,976,095	-		IAI47_18640	0.88	+1.3
3,976,095	-		IAI47_18640	0.88	+0.0
3,976,095	-		IAI47_18640	0.88	-1.9
3,976,095	-		IAI47_18640	0.88	+0.0
3,976,095	-		IAI47_18640	0.88	+0.2
3,976,122	+				+0.3
3,976,122	+				+0.1
3,976,128	+				-0.8
3,976,128	+				-1.0
3,976,128	+				-2.3
3,976,129	-				+0.2
3,976,133	+				+1.2
3,976,134	-				-1.7
3,976,134	-				+2.4
3,976,134	-				-0.1
3,976,134	-				-0.2
3,976,218	-				-1.4
3,976,231	+				-0.7
3,976,231	+				+0.4
3,976,231	+				+0.6
3,976,231	+				+1.1
3,976,231	+				-1.3
3,976,231	+				-0.5
3,976,231	-				-0.2
3,976,232	-				-1.5
3,976,232	-				-2.3
3,976,232	-				+0.6
3,976,232	-				+0.6
3,976,232	-				-1.1
3,976,232	-				-1.9
3,976,243	-				-0.2
3,976,253	+				+0.8
3,976,253	+				-1.5
3,976,253	+				-1.4
3,976,253	+				+0.8
3,976,253	+				+0.8
3,976,254	-				-0.4
3,976,254	-				-0.1
3,976,254	-				+0.5
3,976,254	-				-1.0
3,976,254	-				-0.5
3,976,291	+				-0.5
3,976,292	-				+0.9
3,976,438	+		IAI47_18645	0.22	+0.8
3,976,438	+		IAI47_18645	0.22	+2.0
3,976,438	+		IAI47_18645	0.22	-1.9
3,976,439	-		IAI47_18645	0.22	+0.9
3,976,439	-		IAI47_18645	0.22	+0.6
3,976,439	-		IAI47_18645	0.22	-0.4
3,976,439	-		IAI47_18645	0.22	-1.9
3,976,509	+		IAI47_18645	0.29	+0.7
3,976,529	+		IAI47_18645	0.31	+0.1
3,976,529	+		IAI47_18645	0.31	-0.9
3,976,529	+		IAI47_18645	0.31	-1.0
3,976,529	+		IAI47_18645	0.31	-1.6
3,976,530	-		IAI47_18645	0.31	+2.3
3,976,530	-		IAI47_18645	0.31	+0.5
3,976,530	-		IAI47_18645	0.31	-0.9
3,976,530	-		IAI47_18645	0.31	-1.4
3,976,569	+		IAI47_18645	0.35	-1.5
3,976,569	+		IAI47_18645	0.35	+0.8
3,976,569	+		IAI47_18645	0.35	+0.1
3,976,569	+		IAI47_18645	0.35	+0.4
3,976,569	+		IAI47_18645	0.35	-1.9
3,976,569	+		IAI47_18645	0.35	-0.6
3,976,570	-		IAI47_18645	0.35	+1.3
3,976,570	-		IAI47_18645	0.35	-1.1
3,976,570	-		IAI47_18645	0.35	-0.6
3,976,570	-		IAI47_18645	0.35	+0.7
3,976,576	+		IAI47_18645	0.35	+0.8
3,976,576	+		IAI47_18645	0.35	-0.4
3,976,576	+		IAI47_18645	0.35	-0.2
3,976,576	+		IAI47_18645	0.35	+0.2
3,976,576	+		IAI47_18645	0.35	-0.5
3,976,577	-		IAI47_18645	0.35	-0.9
3,976,577	-		IAI47_18645	0.35	-0.4
3,976,577	-		IAI47_18645	0.35	-0.4
3,976,683	+		IAI47_18645	0.46	-0.3
3,976,683	+		IAI47_18645	0.46	-1.4
3,976,683	+		IAI47_18645	0.46	-0.0
3,976,683	+		IAI47_18645	0.46	+0.1
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