Strain Fitness in Pantoea sp. MT58 around IAI47_14375

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
3,035,158	+		IAI47_14365	0.57	-1.4
3,035,158	+		IAI47_14365	0.57	+0.4
3,035,158	+		IAI47_14365	0.57	+0.3
3,035,159	-		IAI47_14365	0.58	-0.0
3,035,159	-		IAI47_14365	0.58	-1.1
3,035,159	-		IAI47_14365	0.58	+1.0
3,035,410	+				-1.8
3,035,411	-				-1.2
3,035,411	-				+0.3
3,035,413	+				+1.8
3,035,413	+				+0.1
3,035,413	+				+0.2
3,035,414	-				-3.0
3,035,414	-				-1.1
3,035,451	-				+2.0
3,035,463	+				+1.0
3,035,463	+				+1.1
3,035,503	+		IAI47_14370	0.14	-1.3
3,035,503	+		IAI47_14370	0.14	+1.3
3,035,504	-		IAI47_14370	0.14	+0.7
3,035,582	-		IAI47_14370	0.26	+2.3
3,035,632	+		IAI47_14370	0.34	-0.2
3,035,632	+		IAI47_14370	0.34	-1.5
3,035,632	+		IAI47_14370	0.34	+0.5
3,035,632	+		IAI47_14370	0.34	-0.2
3,035,633	-		IAI47_14370	0.34	+1.8
3,035,633	-		IAI47_14370	0.34	-1.4
3,035,667	+		IAI47_14370	0.40	-0.8
3,035,680	+		IAI47_14370	0.42	+1.3
3,035,680	+		IAI47_14370	0.42	-1.0
3,035,680	+		IAI47_14370	0.42	-1.4
3,035,680	+		IAI47_14370	0.42	-2.9
3,035,681	-		IAI47_14370	0.42	-0.9
3,035,681	-		IAI47_14370	0.42	+0.2
3,035,681	-		IAI47_14370	0.42	+2.1
3,035,681	-		IAI47_14370	0.42	+1.2
3,035,681	-		IAI47_14370	0.42	+0.5
3,035,697	+		IAI47_14370	0.45	-2.0
3,035,697	+		IAI47_14370	0.45	-2.1
3,035,698	-		IAI47_14370	0.45	-1.0
3,035,747	-		IAI47_14370	0.53	+0.2
3,035,782	+		IAI47_14370	0.58	+1.3
3,035,782	+		IAI47_14370	0.58	-1.8
3,035,783	-		IAI47_14370	0.58	+1.2
3,035,783	-		IAI47_14370	0.58	+1.0
3,035,783	-		IAI47_14370	0.58	+0.5
3,035,834	+		IAI47_14370	0.67	+0.7
3,035,834	+		IAI47_14370	0.67	+1.2
3,035,834	+		IAI47_14370	0.67	+1.8
3,035,835	-		IAI47_14370	0.67	-0.2
3,035,835	-		IAI47_14370	0.67	-1.0
3,035,835	-		IAI47_14370	0.67	+0.6
3,035,835	-		IAI47_14370	0.67	+1.8
3,035,847	-		IAI47_14370	0.69	-0.2
3,035,847	-		IAI47_14370	0.69	-1.3
3,035,870	+		IAI47_14370	0.72	-1.6
3,035,870	+		IAI47_14370	0.72	-2.1
3,035,871	-		IAI47_14370	0.72	-0.7
3,035,871	-		IAI47_14370	0.72	-1.0
3,035,871	-		IAI47_14370	0.72	+0.0
3,035,871	-		IAI47_14370	0.72	-0.4
3,035,918	-		IAI47_14370	0.80	+0.1
3,035,930	+		IAI47_14370	0.82	+0.3
3,035,930	+		IAI47_14370	0.82	-0.5
3,035,931	-		IAI47_14370	0.82	-0.8
3,035,931	-		IAI47_14370	0.82	+0.7
3,035,931	-		IAI47_14370	0.82	-1.4
3,035,962	+		IAI47_14370	0.87	-0.5
3,035,962	+		IAI47_14370	0.87	+0.1
3,035,963	-		IAI47_14370	0.87	+0.7
3,035,963	-		IAI47_14370	0.87	-1.9
3,035,963	-		IAI47_14370	0.87	-0.2
3,035,992	+				-0.1
3,036,004	-				-0.5
3,036,027	+				-0.5
3,036,027	+				-1.0
3,036,027	+				-0.2
3,036,028	-				+0.3
3,036,028	-				+0.3
3,036,032	-				-0.9
3,036,063	-				-0.6
3,036,071	+				+0.8
3,036,071	+				+1.5
3,036,071	+				+1.8
3,036,071	+				+1.1
3,036,071	+				-0.6
3,036,072	-				+0.3
3,036,072	-				+0.1
3,036,072	-				-1.5
3,036,085	+				-0.1
3,036,085	+				-0.5
3,036,091	+				+1.4
3,036,091	+				+1.4
3,036,091	+				-0.9
3,036,091	+				-0.9
3,036,091	+				+0.8
3,036,091	+				+0.9
3,036,091	+				+0.1
3,036,092	-				+0.2
3,036,092	-				+1.4
3,036,092	-				-1.1
3,036,092	-				-1.3
3,036,095	-				-0.2
3,036,222	+		IAI47_14375	0.19	-0.2
3,036,222	+		IAI47_14375	0.19	+0.9
3,036,223	-		IAI47_14375	0.19	-0.7
3,036,273	+		IAI47_14375	0.26	+1.1
3,036,310	+		IAI47_14375	0.30	-3.4
3,036,310	+		IAI47_14375	0.30	-2.7
3,036,332	+		IAI47_14375	0.33	+0.7
3,036,347	-		IAI47_14375	0.35	+2.4
3,036,399	+		IAI47_14375	0.42	-0.2
3,036,399	+		IAI47_14375	0.42	-1.8
3,036,399	+		IAI47_14375	0.42	-0.7
3,036,399	+		IAI47_14375	0.42	+0.9
3,036,399	+		IAI47_14375	0.42	+2.1
3,036,400	-		IAI47_14375	0.42	+0.3
3,036,409	-		IAI47_14375	0.43	+0.1
3,036,409	-		IAI47_14375	0.43	-1.6
3,036,423	+		IAI47_14375	0.45	+1.9
3,036,423	+		IAI47_14375	0.45	+0.7
3,036,423	+		IAI47_14375	0.45	-1.9
3,036,423	+		IAI47_14375	0.45	+0.9
3,036,424	-		IAI47_14375	0.45	+0.1
3,036,424	-		IAI47_14375	0.45	+0.7
3,036,432	+		IAI47_14375	0.46	-0.1
3,036,432	+		IAI47_14375	0.46	+1.0
3,036,432	+		IAI47_14375	0.46	-0.5
3,036,432	+		IAI47_14375	0.46	-2.2
3,036,432	+		IAI47_14375	0.46	+0.5
3,036,433	-		IAI47_14375	0.46	+1.2
3,036,463	+		IAI47_14375	0.50	-0.4
3,036,509	+		IAI47_14375	0.56	-0.6
3,036,509	+		IAI47_14375	0.56	-0.1
3,036,520	+		IAI47_14375	0.58	-0.9
3,036,520	+		IAI47_14375	0.58	+1.3
3,036,520	+		IAI47_14375	0.58	+1.4
3,036,521	-		IAI47_14375	0.58	-0.6
3,036,521	-		IAI47_14375	0.58	+0.8
3,036,521	-		IAI47_14375	0.58	+0.2
3,036,524	+		IAI47_14375	0.58	-0.7
3,036,524	+		IAI47_14375	0.58	-0.2
3,036,524	+		IAI47_14375	0.58	+0.8
3,036,524	+		IAI47_14375	0.58	-0.2
3,036,524	+		IAI47_14375	0.58	-0.3
3,036,525	-		IAI47_14375	0.58	+1.5
3,036,525	-		IAI47_14375	0.58	-1.0
3,036,525	-		IAI47_14375	0.58	+1.3
3,036,594	+		IAI47_14375	0.67	+1.7
3,036,595	-		IAI47_14375	0.67	+0.9
3,036,595	-		IAI47_14375	0.67	+2.2
3,036,595	-		IAI47_14375	0.67	+1.2
3,036,628	+		IAI47_14375	0.72	+0.2
3,036,628	+		IAI47_14375	0.72	+0.9
3,036,652	+		IAI47_14375	0.75	+1.6
3,036,652	+		IAI47_14375	0.75	+0.0
3,036,652	+		IAI47_14375	0.75	+0.2
3,036,652	+		IAI47_14375	0.75	+0.1
3,036,653	-		IAI47_14375	0.75	-0.1
3,036,653	-		IAI47_14375	0.75	+1.0
3,036,664	+		IAI47_14375	0.76	-0.6
3,036,716	-		IAI47_14375	0.83	+1.0
3,036,739	+		IAI47_14375	0.86	+2.1
3,036,739	+		IAI47_14375	0.86	-0.1
3,036,739	+		IAI47_14375	0.86	-0.5
3,036,740	-		IAI47_14375	0.86	+1.4
3,036,753	+		IAI47_14375	0.88	+1.3
3,036,753	+		IAI47_14375	0.88	+0.4
3,036,754	-		IAI47_14375	0.88	+0.5
3,036,754	-		IAI47_14375	0.88	+0.3
3,036,754	-		IAI47_14375	0.88	-2.7
3,036,754	-		IAI47_14375	0.88	+1.2
3,036,754	-		IAI47_14375	0.88	+1.5
3,036,783	+				+0.7
3,036,783	+				-0.3
3,036,783	+				+0.3
3,036,784	-				-2.1
3,036,784	-				-2.3
3,036,784	-				-0.6
3,036,784	-				+1.3
3,036,784	-				-0.4
3,036,784	-				+1.2
3,036,784	-				-2.3
3,036,784	-				+1.7
3,036,784	-				+1.5
3,036,804	+				-2.8
3,036,845	+				-1.6
3,036,859	+				-0.8
3,036,859	+				-0.7
3,036,859	+				-2.2
3,036,859	+				-2.0
3,036,859	+				+0.4
3,036,860	-				+0.9
3,036,860	-				+1.2
3,036,862	+				-1.5
3,036,863	-				-1.0
3,036,863	-				+0.7
3,036,892	+				-0.5
3,036,898	+				+1.4
3,036,898	+				+0.0
3,036,898	+				+0.8
3,036,899	-				+0.4
3,036,899	-				+0.8
3,036,899	-				+0.1
3,036,922	+				+0.5
3,036,922	+				+0.7
3,036,922	+				+1.1
3,036,923	-				-0.4
3,036,923	-				+0.8
3,036,923	-				-1.0
3,036,923	-				+0.4
3,036,923	-				+0.2
3,036,923	-				-2.5
3,036,923	-				+1.2
3,036,944	+				-0.1
3,036,944	+				+0.7
3,036,944	+				+0.4
3,036,945	-				+0.2
3,036,945	-				-0.1
3,036,945	-				-1.1
3,036,945	-				+2.1
3,036,945	-				+0.5
3,036,945	-				+0.2
3,036,945	-				-0.3
3,037,015	-		IAI47_14380	0.10	-0.8
3,037,015	-		IAI47_14380	0.10	-1.0
3,037,097	+		IAI47_14380	0.20	-0.2
3,037,098	-		IAI47_14380	0.20	-0.8
3,037,098	-		IAI47_14380	0.20	-0.8
3,037,173	+		IAI47_14380	0.29	-1.8
3,037,173	+		IAI47_14380	0.29	+0.6
3,037,173	+		IAI47_14380	0.29	+0.9
3,037,173	+		IAI47_14380	0.29	+1.5
3,037,174	-		IAI47_14380	0.29	-1.6
3,037,174	-		IAI47_14380	0.29	-1.8
3,037,174	-		IAI47_14380	0.29	+0.2
3,037,174	-		IAI47_14380	0.29	+2.1
3,037,340	-		IAI47_14380	0.48	+1.9
3,037,406	+		IAI47_14380	0.56	-0.7
3,037,470	-		IAI47_14380	0.63	+1.2
3,037,590	-		IAI47_14380	0.77	+0.3
3,037,601	-		IAI47_14380	0.79	+0.2
3,037,622	+		IAI47_14380	0.81	+0.8
3,037,622	+		IAI47_14380	0.81	+2.0
3,037,623	-		IAI47_14380	0.81	+0.6
3,037,623	-		IAI47_14380	0.81	+0.7
3,037,670	+		IAI47_14380	0.87	-2.7
3,037,670	+		IAI47_14380	0.87	-1.5
3,037,671	-		IAI47_14380	0.87	+1.5
3,037,671	-		IAI47_14380	0.87	+0.4
3,037,671	-		IAI47_14380	0.87	+1.2
3,037,694	+		IAI47_14380	0.89	+0.6
3,037,694	+		IAI47_14380	0.89	+0.3
3,037,695	-		IAI47_14380	0.90	-0.4
3,037,768	-				+0.5
3,037,779	+				-2.2
3,037,779	+				+0.1
3,037,779	+				+1.8
3,037,779	+				+1.2
3,037,780	-				+0.5
3,037,780	-				+0.3
3,037,780	-				+0.3
3,037,782	+				-1.8
3,037,782	+				-3.5
3,037,782	+				+0.9
3,037,782	+				-0.7
3,037,783	-				+0.6
3,037,783	-				-0.5
3,037,792	+				-2.2
3,037,842	+				-0.3
3,037,842	+				+0.7
3,037,842	+				-0.1
3,037,842	+				+1.9
3,037,842	+				-0.3
3,037,842	+				-1.2
3,037,842	+				-0.0
3,037,842	+				-0.9
3,037,843	-				+0.1
3,037,843	-				-0.3
3,037,843	-				-0.7
3,037,843	-				-0.0
3,037,843	-				+1.0