Strain Fitness in Pantoea sp. MT58 around IAI47_10750

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
2,271,793	+		IAI47_10740	0.45	+1.1
2,271,793	+		IAI47_10740	0.45	+0.4
2,271,793	+		IAI47_10740	0.45	+0.0
2,271,793	+		IAI47_10740	0.45	+0.8
2,271,793	+		IAI47_10740	0.45	+2.0
2,271,794	-		IAI47_10740	0.45	+1.6
2,271,794	-		IAI47_10740	0.45	+0.5
2,271,794	-		IAI47_10740	0.45	+1.3
2,271,794	-		IAI47_10740	0.45	+2.8
2,271,794	-		IAI47_10740	0.45	+0.8
2,271,794	-		IAI47_10740	0.45	-0.3
2,271,794	-		IAI47_10740	0.45	+0.9
2,271,804	-		IAI47_10740	0.47	+1.3
2,271,867	-		IAI47_10740	0.61	+1.3
2,271,867	-		IAI47_10740	0.61	+1.9
2,271,938	+		IAI47_10740	0.76	+0.8
2,271,939	-		IAI47_10740	0.76	+1.4
2,271,939	-		IAI47_10740	0.76	+1.3
2,271,939	-		IAI47_10740	0.76	+3.6
2,271,986	+		IAI47_10740	0.86	+2.3
2,271,986	+		IAI47_10740	0.86	+1.4
2,271,986	+		IAI47_10740	0.86	+0.8
2,271,987	-		IAI47_10740	0.87	+1.2
2,271,987	-		IAI47_10740	0.87	+2.1
2,271,999	-		IAI47_10740	0.89	+1.3
2,272,023	+				-1.2
2,272,023	+				+1.4
2,272,023	+				+0.8
2,272,023	+				-1.4
2,272,023	+				+1.2
2,272,023	+				+2.5
2,272,023	+				+1.7
2,272,024	-				+0.6
2,272,024	-				+0.1
2,272,024	-				+1.4
2,272,024	-				+2.0
2,272,024	-				+1.4
2,272,024	-				+0.8
2,272,029	+				+1.9
2,272,029	+				-0.2
2,272,029	+				+0.9
2,272,030	-				+0.1
2,272,030	-				+0.3
2,272,030	-				+0.8
2,272,030	-				+0.7
2,272,098	-				-1.6
2,272,098	-				-0.0
2,272,120	+				+0.8
2,272,120	+				+2.4
2,272,120	+				+1.7
2,272,120	+				+0.7
2,272,121	-				+0.4
2,272,121	-				+2.4
2,272,121	-				+0.9
2,272,121	-				+1.1
2,272,162	+				+0.0
2,272,163	-				-1.9
2,272,163	-				-1.2
2,272,186	+				+3.0
2,272,187	-				+1.2
2,272,199	+				-1.2
2,272,228	-				-2.8
2,272,288	-		IAI47_10745	0.21	+0.0
2,272,322	+		IAI47_10745	0.27	+1.3
2,272,349	+		IAI47_10745	0.33	+0.3
2,272,349	+		IAI47_10745	0.33	+1.1
2,272,350	-		IAI47_10745	0.33	-1.2
2,272,385	+		IAI47_10745	0.39	+0.5
2,272,386	-		IAI47_10745	0.40	+1.4
2,272,488	+		IAI47_10745	0.59	+0.1
2,272,488	+		IAI47_10745	0.59	+0.9
2,272,489	-		IAI47_10745	0.60	+0.6
2,272,489	-		IAI47_10745	0.60	+0.8
2,272,556	+		IAI47_10745	0.72	-0.6
2,272,556	+		IAI47_10745	0.72	-0.6
2,272,556	+		IAI47_10745	0.72	+0.6
2,272,556	+		IAI47_10745	0.72	+0.1
2,272,556	+		IAI47_10745	0.72	-0.4
2,272,557	-		IAI47_10745	0.73	-0.1
2,272,557	-		IAI47_10745	0.73	-0.5
2,272,557	-		IAI47_10745	0.73	+1.1
2,272,557	-		IAI47_10745	0.73	+1.1
2,272,557	-		IAI47_10745	0.73	+1.1
2,272,557	-		IAI47_10745	0.73	-0.7
2,272,611	+		IAI47_10745	0.83	+0.5
2,272,612	-		IAI47_10745	0.83	-0.4
2,272,730	+				+0.7
2,272,730	+				+1.5
2,272,731	-				-0.5
2,272,731	-				+1.1
2,272,731	-				-1.4
2,272,751	+				-0.6
2,272,751	+				+0.2
2,272,777	+				-0.6
2,272,813	-				-0.3
2,272,887	+		IAI47_10750	0.12	+1.0
2,272,888	-		IAI47_10750	0.12	+1.3
2,272,930	+		IAI47_10750	0.16	+1.3
2,272,930	+		IAI47_10750	0.16	+0.0
2,272,931	-		IAI47_10750	0.16	-0.2
2,272,938	+		IAI47_10750	0.17	+0.7
2,272,940	+		IAI47_10750	0.18	-0.8
2,272,941	-		IAI47_10750	0.18	+1.7
2,273,012	+		IAI47_10750	0.26	+0.8
2,273,250	+		IAI47_10750	0.52	-1.8
2,273,250	+		IAI47_10750	0.52	+1.1
2,273,251	-		IAI47_10750	0.52	+0.4
2,273,251	-		IAI47_10750	0.52	-1.7
2,273,251	-		IAI47_10750	0.52	-0.2
2,273,364	+		IAI47_10750	0.65	-0.7
2,273,365	-		IAI47_10750	0.65	-1.6
2,273,384	+		IAI47_10750	0.67	+0.3
2,273,384	+		IAI47_10750	0.67	+0.4
2,273,385	-		IAI47_10750	0.67	+0.7
2,273,385	-		IAI47_10750	0.67	-1.1
2,273,385	-		IAI47_10750	0.67	-0.5
2,273,507	+		IAI47_10750	0.81	+1.8
2,273,508	-		IAI47_10750	0.81	-0.1
2,273,508	-		IAI47_10750	0.81	-0.2
2,273,516	+		IAI47_10750	0.82	+0.0
2,273,517	-		IAI47_10750	0.82	-3.4
2,273,517	-		IAI47_10750	0.82	+2.2
2,273,517	-		IAI47_10750	0.82	+2.2
2,273,517	-		IAI47_10750	0.82	+0.4
2,273,541	+		IAI47_10750	0.85	-1.7
2,273,542	-		IAI47_10750	0.85	+0.8
2,273,542	-		IAI47_10750	0.85	+0.7
2,273,542	-		IAI47_10750	0.85	+0.7
2,273,542	-		IAI47_10750	0.85	-0.6
2,273,568	+		IAI47_10750	0.88	-0.5
2,273,618	+				-1.6
2,273,674	+				-0.1
2,273,674	+				-0.5
2,273,674	+				-1.4
2,273,674	+				-0.7
2,273,674	+				-1.4
2,273,675	-				-1.7
2,273,707	+				+0.7
2,273,707	+				+0.4
2,273,708	-				-1.3
2,273,708	-				-0.7
2,273,711	+				-0.6
2,273,711	+				-1.2
2,273,711	+				-1.1
2,273,712	-				-1.2
2,273,712	-				-1.4
2,273,712	-				-0.2
2,273,712	-				-0.6
2,273,726	+				-1.5
2,273,726	+				-1.7
2,273,727	-				+1.0
2,273,728	+				+0.5
2,273,728	+				-1.1
2,273,754	+				-1.3
2,273,754	+				-0.5
2,273,754	+				-0.6
2,273,754	+				-1.2
2,273,755	-				-0.2
2,273,755	-				-0.1
2,273,755	-				-0.0
2,273,862	-		IAI47_10755	0.47	+0.3
2,273,898	+		IAI47_10755	0.62	-3.7
2,274,005	+				+1.4
2,274,006	-				-0.2
2,274,010	-				+0.3
2,274,010	-				+0.8
2,274,040	-				-1.7
2,274,080	+				+0.1
2,274,081	-				-0.2
2,274,155	+				+0.3
2,274,156	-				+2.4
2,274,156	-				+0.6
2,274,176	+				-0.8
2,274,176	+				+0.7
2,274,176	+				-0.9
2,274,177	-				+0.7
2,274,177	-				-0.2
2,274,191	+				-0.9
2,274,191	+				-0.4
2,274,192	-				+1.1
2,274,192	-				-0.4
2,274,192	-				+2.8
2,274,309	+		IAI47_10760	0.23	-1.3
2,274,309	+		IAI47_10760	0.23	-0.4
2,274,309	+		IAI47_10760	0.23	+1.8
2,274,309	+		IAI47_10760	0.23	-1.2
2,274,309	+		IAI47_10760	0.23	+0.1
2,274,310	-		IAI47_10760	0.23	+0.1
2,274,310	-		IAI47_10760	0.23	+1.0
2,274,310	-		IAI47_10760	0.23	-0.2
2,274,310	-		IAI47_10760	0.23	+0.7
2,274,310	-		IAI47_10760	0.23	-0.2
2,274,310	-		IAI47_10760	0.23	+0.0
2,274,312	+		IAI47_10760	0.24	+0.1
2,274,312	+		IAI47_10760	0.24	-3.3
2,274,313	-		IAI47_10760	0.24	-0.7
2,274,315	+		IAI47_10760	0.24	-1.5
2,274,315	+		IAI47_10760	0.24	-1.9
2,274,316	-		IAI47_10760	0.24	-1.1
2,274,326	+		IAI47_10760	0.26	+0.1
2,274,360	+		IAI47_10760	0.32	+0.6
2,274,360	+		IAI47_10760	0.32	-0.5
2,274,361	-		IAI47_10760	0.32	-0.5
2,274,361	-		IAI47_10760	0.32	+0.5
2,274,482	+		IAI47_10760	0.52	+0.3
2,274,482	+		IAI47_10760	0.52	+0.4
2,274,482	+		IAI47_10760	0.52	+1.8
2,274,483	-		IAI47_10760	0.52	-0.9
2,274,483	-		IAI47_10760	0.52	+0.3
2,274,483	-		IAI47_10760	0.52	-0.1
2,274,501	-		IAI47_10760	0.55	+0.5
2,274,517	+		IAI47_10760	0.58	+1.6
2,274,517	+		IAI47_10760	0.58	+2.0
2,274,517	+		IAI47_10760	0.58	-0.2
2,274,517	+		IAI47_10760	0.58	-1.9
2,274,518	-		IAI47_10760	0.58	+2.1
2,274,658	+		IAI47_10760	0.82	-1.8
2,274,658	+		IAI47_10760	0.82	-1.3
2,274,659	-		IAI47_10760	0.82	+0.6
2,274,659	-		IAI47_10760	0.82	-1.6