Strain Fitness in Pantoea sp. MT58 around IAI47_06345

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
1,288,481	+		IAI47_06335	0.49	-2.1
1,288,481	+		IAI47_06335	0.49	+1.2
1,288,481	+		IAI47_06335	0.49	-0.3
1,288,481	+		IAI47_06335	0.49	-1.4
1,288,482	-		IAI47_06335	0.49	+0.3
1,288,482	-		IAI47_06335	0.49	+0.1
1,288,482	-		IAI47_06335	0.49	+1.5
1,288,482	-		IAI47_06335	0.49	+1.7
1,288,554	+		IAI47_06335	0.64	+0.6
1,288,554	+		IAI47_06335	0.64	+1.2
1,288,555	-		IAI47_06335	0.64	+1.6
1,288,565	+		IAI47_06335	0.66	+0.4
1,288,565	+		IAI47_06335	0.66	+0.7
1,288,566	-		IAI47_06335	0.66	+0.1
1,288,574	+		IAI47_06335	0.68	+1.1
1,288,574	+		IAI47_06335	0.68	+1.3
1,288,574	+		IAI47_06335	0.68	-0.1
1,288,574	+		IAI47_06335	0.68	-1.7
1,288,574	+		IAI47_06335	0.68	-2.1
1,288,574	+		IAI47_06335	0.68	+1.1
1,288,575	-		IAI47_06335	0.68	+2.6
1,288,575	-		IAI47_06335	0.68	+0.2
1,288,587	+		IAI47_06335	0.70	-1.4
1,288,587	+		IAI47_06335	0.70	+0.9
1,288,587	+		IAI47_06335	0.70	+3.0
1,288,589	+		IAI47_06335	0.71	-0.6
1,288,589	+		IAI47_06335	0.71	+0.2
1,288,589	+		IAI47_06335	0.71	-1.4
1,288,589	+		IAI47_06335	0.71	-0.6
1,288,607	+		IAI47_06335	0.74	-0.3
1,288,647	+		IAI47_06335	0.82	+0.7
1,288,647	+		IAI47_06335	0.82	+1.3
1,288,647	+		IAI47_06335	0.82	+0.2
1,288,648	-		IAI47_06335	0.83	-1.1
1,288,660	+		IAI47_06335	0.85	+1.0
1,288,660	+		IAI47_06335	0.85	-2.0
1,288,660	+		IAI47_06335	0.85	-1.1
1,288,661	-		IAI47_06335	0.85	-0.3
1,288,661	-		IAI47_06335	0.85	+2.3
1,288,661	-		IAI47_06335	0.85	-0.7
1,288,661	-		IAI47_06335	0.85	+0.4
1,288,690	-				+0.1
1,288,690	-				-0.2
1,288,696	+				-0.6
1,288,696	+				-1.3
1,288,696	+				-2.4
1,288,696	+				-1.8
1,288,696	+				+0.3
1,288,697	-				-0.5
1,288,697	-				+0.6
1,288,697	-				+1.1
1,288,697	-				-0.2
1,288,707	+				-0.7
1,288,753	+				-0.8
1,288,753	+				+1.9
1,288,754	-				-2.2
1,288,754	-				+0.2
1,288,766	+				+1.7
1,288,766	+				-0.1
1,288,775	+				-0.8
1,288,846	-		IAI47_06340	0.15	-0.5
1,288,872	+		IAI47_06340	0.19	+0.5
1,288,873	-		IAI47_06340	0.19	+0.2
1,288,935	+		IAI47_06340	0.28	-1.4
1,288,935	+		IAI47_06340	0.28	-0.2
1,288,935	+		IAI47_06340	0.28	+0.3
1,288,936	-		IAI47_06340	0.29	+0.0
1,288,937	+		IAI47_06340	0.29	-0.3
1,288,937	+		IAI47_06340	0.29	+1.6
1,288,937	+		IAI47_06340	0.29	+0.0
1,288,937	+		IAI47_06340	0.29	-0.1
1,288,938	-		IAI47_06340	0.29	+0.4
1,288,938	-		IAI47_06340	0.29	-0.5
1,288,938	-		IAI47_06340	0.29	+0.9
1,288,938	-		IAI47_06340	0.29	-0.3
1,288,950	+		IAI47_06340	0.31	+0.2
1,289,043	+		IAI47_06340	0.45	-0.2
1,289,043	+		IAI47_06340	0.45	+1.5
1,289,044	-		IAI47_06340	0.45	-2.7
1,289,044	-		IAI47_06340	0.45	-1.1
1,289,044	-		IAI47_06340	0.45	+1.2
1,289,044	-		IAI47_06340	0.45	+2.4
1,289,044	-		IAI47_06340	0.45	+0.7
1,289,111	+		IAI47_06340	0.55	+1.5
1,289,133	+		IAI47_06340	0.58	+0.6
1,289,158	-		IAI47_06340	0.62	+3.5
1,289,158	-		IAI47_06340	0.62	+0.3
1,289,176	+		IAI47_06340	0.65	-0.1
1,289,177	-		IAI47_06340	0.65	-0.6
1,289,222	+		IAI47_06340	0.72	+1.9
1,289,223	-		IAI47_06340	0.72	+0.1
1,289,286	+		IAI47_06340	0.82	-0.8
1,289,286	+		IAI47_06340	0.82	-0.3
1,289,286	+		IAI47_06340	0.82	+0.2
1,289,287	-		IAI47_06340	0.82	-0.4
1,289,287	-		IAI47_06340	0.82	+0.5
1,289,287	-		IAI47_06340	0.82	-0.4
1,289,287	-		IAI47_06340	0.82	+1.0
1,289,287	-		IAI47_06340	0.82	+1.6
1,289,289	+		IAI47_06340	0.82	+1.6
1,289,289	+		IAI47_06340	0.82	-0.1
1,289,289	+		IAI47_06340	0.82	-0.4
1,289,289	+		IAI47_06340	0.82	-1.7
1,289,290	-		IAI47_06340	0.82	-0.3
1,289,290	-		IAI47_06340	0.82	-0.3
1,289,290	-		IAI47_06340	0.82	-2.1
1,289,290	-		IAI47_06340	0.82	-0.4
1,289,332	-		IAI47_06340	0.89	+0.1
1,289,358	-				-1.0
1,289,358	-				+0.1
1,289,385	+				+0.2
1,289,385	+				+0.5
1,289,385	+				-0.8
1,289,391	+				-1.5
1,289,391	+				+0.4
1,289,391	+				+1.5
1,289,391	+				-0.8
1,289,404	+				+0.5
1,289,404	+				-2.1
1,289,404	+				-1.3
1,289,405	-				-0.7
1,289,437	+				+0.7
1,289,438	-				-0.4
1,289,438	-				-0.5
1,289,438	-				-0.1
1,289,447	+				-0.1
1,289,447	+				-1.6
1,289,448	-				+0.2
1,289,448	-				+0.4
1,289,448	-				-2.1
1,289,448	-				-1.6
1,289,506	+		IAI47_06345	0.12	-2.5
1,289,507	-		IAI47_06345	0.12	-0.4
1,289,507	-		IAI47_06345	0.12	-1.8
1,289,576	+		IAI47_06345	0.23	-0.1
1,289,606	+		IAI47_06345	0.28	+0.3
1,289,606	+		IAI47_06345	0.28	-0.2
1,289,606	+		IAI47_06345	0.28	+0.2
1,289,606	+		IAI47_06345	0.28	-2.3
1,289,606	+		IAI47_06345	0.28	-1.2
1,289,606	+		IAI47_06345	0.28	-0.8
1,289,606	+		IAI47_06345	0.28	-0.1
1,289,606	+		IAI47_06345	0.28	-2.1
1,289,606	+		IAI47_06345	0.28	+0.6
1,289,606	+		IAI47_06345	0.28	-1.5
1,289,607	-				+1.7
1,289,607	-		IAI47_06345	0.28	-1.4
1,289,607	-		IAI47_06345	0.28	+0.0
1,289,607	-		IAI47_06345	0.28	-2.1
1,289,607	-		IAI47_06345	0.28	-0.7
1,289,607	-		IAI47_06345	0.28	-2.4
1,289,611	+		IAI47_06345	0.29	+0.2
1,289,611	+		IAI47_06345	0.29	-2.4
1,289,611	+		IAI47_06345	0.29	-0.6
1,289,611	+		IAI47_06345	0.29	-1.4
1,289,612	-		IAI47_06345	0.29	-1.0
1,289,612	-		IAI47_06345	0.29	-1.1
1,289,612	-		IAI47_06345	0.29	+0.2
1,289,612	-		IAI47_06345	0.29	-1.1
1,289,612	-		IAI47_06345	0.29	+0.7
1,289,660	+		IAI47_06345	0.37	-0.1
1,289,660	+		IAI47_06345	0.37	-1.8
1,289,660	+		IAI47_06345	0.37	-1.4
1,289,661	-		IAI47_06345	0.38	+1.6
1,289,674	+		IAI47_06345	0.40	-2.2
1,289,689	+		IAI47_06345	0.42	+1.4
1,289,758	+		IAI47_06345	0.54	-1.1
1,289,758	+		IAI47_06345	0.54	-0.6
1,289,758	+		IAI47_06345	0.54	-0.4
1,289,758	+		IAI47_06345	0.54	-0.3
1,289,759	-		IAI47_06345	0.54	+1.7
1,289,759	-		IAI47_06345	0.54	-1.6
1,289,759	-		IAI47_06345	0.54	+0.4
1,289,759	-		IAI47_06345	0.54	+0.9
1,289,759	-		IAI47_06345	0.54	-2.4
1,289,782	+		IAI47_06345	0.58	-0.2
1,289,782	+		IAI47_06345	0.58	+1.1
1,289,783	-		IAI47_06345	0.58	-1.9
1,289,783	-		IAI47_06345	0.58	+0.2
1,289,783	-		IAI47_06345	0.58	-2.2
1,289,783	-		IAI47_06345	0.58	-1.0
1,289,783	-		IAI47_06345	0.58	-2.9
1,289,783	-		IAI47_06345	0.58	+0.2
1,289,783	-		IAI47_06345	0.58	+0.5
1,289,783	-		IAI47_06345	0.58	+2.0
1,289,785	+		IAI47_06345	0.58	-1.7
1,289,785	+		IAI47_06345	0.58	-1.0
1,289,785	+		IAI47_06345	0.58	-2.0
1,289,786	-		IAI47_06345	0.58	+0.6
1,289,786	-		IAI47_06345	0.58	-1.4
1,289,786	-		IAI47_06345	0.58	-0.5
1,289,786	-		IAI47_06345	0.58	-0.3
1,289,786	-		IAI47_06345	0.58	-3.0
1,289,786	-		IAI47_06345	0.58	+0.6
1,289,802	+		IAI47_06345	0.61	-2.1
1,289,803	-		IAI47_06345	0.61	+1.2
1,289,836	+		IAI47_06345	0.67	-0.1
1,289,836	+		IAI47_06345	0.67	+1.1
1,289,836	+		IAI47_06345	0.67	+0.3
1,289,855	+		IAI47_06345	0.70	-0.3
1,289,855	+		IAI47_06345	0.70	-0.2
1,289,855	+		IAI47_06345	0.70	-0.4
1,289,855	+		IAI47_06345	0.70	+0.1
1,289,856	-		IAI47_06345	0.70	-0.2
1,289,856	-		IAI47_06345	0.70	-0.5
1,289,856	-		IAI47_06345	0.70	+0.6
1,289,856	-		IAI47_06345	0.70	-1.2
1,289,856	-		IAI47_06345	0.70	+0.4
1,289,856	-		IAI47_06345	0.70	-2.1
1,289,856	-		IAI47_06345	0.70	-0.7
1,289,868	-		IAI47_06345	0.72	+0.1
1,289,921	+		IAI47_06345	0.81	+0.6
1,289,921	+		IAI47_06345	0.81	+0.8
1,289,922	-		IAI47_06345	0.81	+0.2
1,289,922	-		IAI47_06345	0.81	+1.0
1,289,922	-		IAI47_06345	0.81	-1.5
1,289,987	+				-0.4
1,289,987	+				+2.0
1,289,988	-				-0.3
1,289,996	+				+1.2
1,289,996	+				+0.2
1,289,996	+				-1.0
1,289,996	+				-0.0
1,289,997	-				-3.2
1,289,997	-				-2.1
1,290,081	+				-1.9
1,290,081	+				-1.2
1,290,081	+				-0.8
1,290,082	-				+0.4
1,290,090	+				+0.4
1,290,090	+				-0.7
1,290,091	-				-2.2
1,290,091	-				+2.2
1,290,091	-				-1.1
1,290,092	+				+0.7
1,290,092	+				-0.3
1,290,092	+				+0.6
1,290,093	-				+1.1
1,290,093	-				-1.2
1,290,115	+				+0.3
1,290,115	+				+1.1
1,290,116	-				+0.4
1,290,140	+				+1.3
1,290,141	-				+0.0
1,290,180	-				-0.3
1,290,250	-		IAI47_06350	0.12	+0.9
1,290,288	-		IAI47_06350	0.15	-1.3
1,290,322	+		IAI47_06350	0.18	+0.8
1,290,322	+		IAI47_06350	0.18	-1.6
1,290,322	+		IAI47_06350	0.18	-2.8
1,290,322	+		IAI47_06350	0.18	+0.4
1,290,322	+		IAI47_06350	0.18	+0.8
1,290,322	+		IAI47_06350	0.18	+0.4
1,290,322	+		IAI47_06350	0.18	-1.1
1,290,322	+		IAI47_06350	0.18	+1.7
1,290,323	-		IAI47_06350	0.18	-2.0
1,290,323	-		IAI47_06350	0.18	+1.6
1,290,323	-		IAI47_06350	0.18	-1.2
1,290,323	-		IAI47_06350	0.18	-2.7
1,290,323	-		IAI47_06350	0.18	-0.0
1,290,362	+		IAI47_06350	0.21	-1.6
1,290,362	+		IAI47_06350	0.21	-0.5
1,290,362	+		IAI47_06350	0.21	-0.1
1,290,362	+		IAI47_06350	0.21	+0.9
1,290,362	+		IAI47_06350	0.21	-3.6
1,290,363	-		IAI47_06350	0.21	+2.5
1,290,363	-		IAI47_06350	0.21	-0.1
1,290,400	+		IAI47_06350	0.24	-1.5
1,290,400	+		IAI47_06350	0.24	-0.6
1,290,423	-		IAI47_06350	0.26	+0.3
1,290,423	-		IAI47_06350	0.26	-0.3
1,290,480	+		IAI47_06350	0.31	-0.2
1,290,527	+		IAI47_06350	0.35	-0.4
1,290,527	+		IAI47_06350	0.35	-0.6
1,290,527	+		IAI47_06350	0.35	+0.7
1,290,527	+		IAI47_06350	0.35	-0.6
1,290,527	+		IAI47_06350	0.35	-3.0
1,290,527	+		IAI47_06350	0.35	+0.3
1,290,527	+		IAI47_06350	0.35	-1.1
1,290,528	-		IAI47_06350	0.35	-0.2
1,290,528	-		IAI47_06350	0.35	-0.3
1,290,528	-		IAI47_06350	0.35	-1.4
1,290,529	+		IAI47_06350	0.35	-1.8
1,290,530	-		IAI47_06350	0.35	-0.3
1,290,530	-		IAI47_06350	0.35	+1.7
1,290,561	+		IAI47_06350	0.37	+0.7
1,290,562	-		IAI47_06350	0.38	+0.2
1,290,562	-		IAI47_06350	0.38	-0.6
1,290,595	+		IAI47_06350	0.40	-2.9
1,290,595	+		IAI47_06350	0.40	+2.3
1,290,676	+		IAI47_06350	0.47	+0.3
1,290,677	-		IAI47_06350	0.47	-0.2
1,290,719	+		IAI47_06350	0.50	+0.6
1,290,719	+		IAI47_06350	0.50	+1.9
1,290,719	+		IAI47_06350	0.50	+1.0
1,290,719	+		IAI47_06350	0.50	+0.7
1,290,719	+		IAI47_06350	0.50	+1.7
1,290,720	-		IAI47_06350	0.50	+1.5
1,290,720	-		IAI47_06350	0.50	-0.9
1,290,720	-		IAI47_06350	0.50	+1.2
1,290,747	+		IAI47_06350	0.53	+0.3
1,290,748	-		IAI47_06350	0.53	-0.3
1,290,748	-		IAI47_06350	0.53	+0.1
1,290,748	-		IAI47_06350	0.53	+0.4
1,290,748	-		IAI47_06350	0.53	-0.6
1,290,761	+		IAI47_06350	0.54	-0.4
1,290,761	+		IAI47_06350	0.54	-1.3
1,290,761	+		IAI47_06350	0.54	+0.7
1,290,761	+		IAI47_06350	0.54	+0.1
1,290,762	-		IAI47_06350	0.54	+0.3
1,290,762	-		IAI47_06350	0.54	+0.4
1,290,762	-		IAI47_06350	0.54	+1.0
1,290,762	-		IAI47_06350	0.54	-0.6
1,290,766	+		IAI47_06350	0.54	+1.9
1,290,766	+		IAI47_06350	0.54	-2.1
1,290,766	+		IAI47_06350	0.54	+1.3
1,290,766	+		IAI47_06350	0.54	-0.5
1,290,767	-		IAI47_06350	0.54	-0.9
1,290,767	-		IAI47_06350	0.54	+0.6
1,290,767	-		IAI47_06350	0.54	-1.2
1,290,779	+		IAI47_06350	0.55	-0.0
1,290,786	-		IAI47_06350	0.56	+0.2
1,290,786	-		IAI47_06350	0.56	-0.4
1,290,815	+		IAI47_06350	0.58	+0.5
1,290,825	+		IAI47_06350	0.59	+0.7
1,290,840	-		IAI47_06350	0.60	+0.5
1,290,840	-		IAI47_06350	0.60	-2.2
1,290,840	-		IAI47_06350	0.60	-0.7
1,290,840	-		IAI47_06350	0.60	+0.7
1,290,883	+		IAI47_06350	0.64	-0.8
1,290,883	+		IAI47_06350	0.64	+0.7
1,290,883	+		IAI47_06350	0.64	-0.1
1,290,883	+		IAI47_06350	0.64	+1.0
1,290,883	+		IAI47_06350	0.64	+0.7
1,290,883	+		IAI47_06350	0.64	-0.8
1,290,884	-		IAI47_06350	0.64	-0.2
1,290,884	-		IAI47_06350	0.64	-0.2
1,290,884	-		IAI47_06350	0.64	-1.0
1,290,884	-		IAI47_06350	0.64	+1.1
1,290,935	-		IAI47_06350	0.68	-0.4
1,291,022	+		IAI47_06350	0.75	+0.1
1,291,023	-		IAI47_06350	0.75	-0.6
1,291,023	-		IAI47_06350	0.75	+1.2
1,291,023	-		IAI47_06350	0.75	+0.7
1,291,024	+		IAI47_06350	0.75	-1.1
1,291,024	+		IAI47_06350	0.75	+1.3
1,291,024	+		IAI47_06350	0.75	+0.3
1,291,024	+		IAI47_06350	0.75	-0.1
1,291,025	-		IAI47_06350	0.76	+1.0
1,291,025	-		IAI47_06350	0.76	+2.1
1,291,025	-		IAI47_06350	0.76	-2.1
1,291,025	-		IAI47_06350	0.76	-0.4
1,291,025	-		IAI47_06350	0.76	+0.3
1,291,025	-		IAI47_06350	0.76	+0.6
1,291,025	-		IAI47_06350	0.76	+2.1
1,291,025	-		IAI47_06350	0.76	+1.3
1,291,028	+		IAI47_06350	0.76	-0.6
1,291,028	+		IAI47_06350	0.76	-0.1
1,291,029	-		IAI47_06350	0.76	+2.6
1,291,029	-		IAI47_06350	0.76	-0.5
1,291,029	-		IAI47_06350	0.76	+1.3
1,291,029	-		IAI47_06350	0.76	-0.4
1,291,029	-		IAI47_06350	0.76	-1.4
1,291,029	-		IAI47_06350	0.76	-0.4
1,291,029	-		IAI47_06350	0.76	+0.2
1,291,029	-		IAI47_06350	0.76	+0.8
1,291,029	-		IAI47_06350	0.76	-0.5